Factsheet for Bra002179.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003735.1-P
Bra008231.1-P
Bra015801.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G18680.1	Bra003735.1-P	AT1G75950.1	25168737
AT5G18680.1	Bra008231.1-P	AT1G75950.1	25168737
AT5G18680.1	Bra015801.1-P	AT1G75950.1	25168737

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13913	Canola	endoplasmic reticulum, extracellular	7.52	100.0
CDX92589	Canola	mitochondrion	93.73	100.0
CDY13914	Canola	mitochondrion	58.9	96.31
AT5G18680.1	Thale cress	mitochondrion	88.47	90.75
Bra020754.1-P	Field mustard	cytosol	66.42	77.03
VIT_12s0028g00190.t01	Wine grape	cytosol, extracellular, mitochondrion, plastid	9.52	64.41
Bra021446.1-P	Field mustard	cytosol	57.14	56.72
Bra039620.1-P	Field mustard	cytosol	46.87	49.47
Bra040862.1-P	Field mustard	mitochondrion, nucleus	46.37	46.72
Bra041095.1-P	Field mustard	cytosol, mitochondrion	43.86	46.42
Bra015624.1-P	Field mustard	cytosol, mitochondrion	45.61	45.16
Bra024763.1-P	Field mustard	cytosol	49.37	44.98
Bra030942.1-P	Field mustard	mitochondrion	43.36	44.13
Bra010985.1-P	Field mustard	cytosol	48.37	43.96
Bra012486.1-P	Field mustard	cytosol	48.62	43.79
Bra040803.1-P	Field mustard	cytosol	46.87	41.83
Bra015711.1-P	Field mustard	cytosol, mitochondrion	47.12	40.43
Bra026081.1-P	Field mustard	nucleus	17.04	17.48

Protein Annotations

MapMan:15.5.21	Gene3D:3.20.90.10	EnsemblPlantsGene:Bra002179	EnsemblPlants:Bra002179.1	EnsemblPlants:Bra002179.1-P	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR025659
UniProt:M4CD98	PFAM:PF00646	PFAM:PF01167	PRINTS:PR01573	ScanProsite:PS01200	PANTHER:PTHR16517
PANTHER:PTHR16517:SF73	SUPFAM:SSF54518	SUPFAM:SSF81383	InterPro:Tubby-like_C	InterPro:Tubby_C	InterPro:Tubby_C_CS
UniParc:UPI0002543762	SEG:seg	:	:	:	:

Description

AT5G18680 (E=1e-174) AtTLP11 | AtTLP11 (TUBBY LIKE PROTEIN 11); phosphoric diester hydrolase/ transcription factor

Coordinates

chrA10:+:11064508..11066299

Molecular Weight (calculated)

43928.6 Da

IEP (calculated)

10.152

GRAVY (calculated)

-0.289

Length

399 amino acids

Sequence
(BLAST)

001: MTLRSLILEM RSRSHRVVHD LASAADSTPS ASSEANRWSD IPEELLREIL IRVEAADGGG WPSRRSVVAC AGVCRGWRLL MNETVAVPEI SSKLTFPISL
101: KQPGPRESLV QCFIKRNRAT QSYHLYLGLT NSLTDEGKFL LAASKLKHTT CTDYIISLRS DDMSRRSQAY VGKVRSNFLG TKFTVFDGNM LPSSTSTGPA
201: RLRKNRSYNP AKASAKVPLG SFPVSHITYE LNVLGSRGPR KMQCVMDTIP TSAMEQPRGV SSSEPSEFPY LGGSRSTFSR SQSKPLRSSS SGLSHLKETP
301: LVLSNKTPRW HEQLRCWCLN FHGRVTVASV KNFQLVAAAA SSGVGGGEGL SPERQNERII LQFGKVGKDM FTMDYGYPIS AFQAFAICLS SFETRIACE

Best Arabidopsis Sequence Match ( AT5G18680.1 )
(BLAST)

001: MTLRSLILEM RSRPHRVVHD LAAAAAADST SVSSQDYRWS EIPEELLREI LIRVEAADGG GWPSRRSVVA CAGVCRGWRL LMNETVVVPE ISSKLTFPIS
101: LKQPGPRDSL VQCFIKRNRI TQSYHLYLGL TNSLTDDGKF LLAACKLKHT TCTDYIISLR SDDMSRRSQA YVGKVRSNFL GTKFTVFDGN LLPSTGAAKL
201: RKSRSYNPAK VSAKVPLGSY PVAHITYELN VLGSRGPRKM QCLMDTIPTS TMEPQGVASE PSEFPLLGTR STLSRSQSKP LRSSSSHLKE TPLVLSNKTP
301: RWHEQLRCWC LNFHGRVTVA SVKNFQLVAA GASCGSGTGM SPERQSERII LQFGKVGKDM FTMDYGYPIS AFQAFAICLS SFETRIACE

Arabidopsis Description

TULP11Uncharacterized protein At5g18680 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVQ0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.