Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 4
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY13913 | Canola | endoplasmic reticulum, extracellular | 7.71 | 100.0 |
| CDX92589 | Canola | mitochondrion | 85.86 | 89.3 |
| Bra002179.1-P | Field mustard | mitochondrion | 90.75 | 88.47 |
| CDY13914 | Canola | mitochondrion | 54.5 | 86.89 |
| AT3G06380.1 | Thale cress | mitochondrion | 73.52 | 75.26 |
| VIT_12s0028g00190.t01 | Wine grape | cytosol, extracellular, mitochondrion, plastid | 9.77 | 64.41 |
| AT2G47900.3 | Thale cress | cytosol | 57.58 | 55.04 |
| AT2G18280.2 | Thale cress | cytosol | 47.04 | 46.45 |
| AT1G53320.1 | Thale cress | mitochondrion | 42.67 | 43.8 |
| AT1G25280.1 | Thale cress | cytosol | 49.87 | 43.6 |
| AT1G47270.1 | Thale cress | nucleus | 45.76 | 43.1 |
| AT1G43640.1 | Thale cress | cytosol | 47.3 | 42.89 |
| AT1G76900.1 | Thale cress | cytosol | 49.36 | 42.2 |
| AT1G61940.2 | Thale cress | cytosol | 23.91 | 35.09 |
| AT1G16070.1 | Thale cress | nucleus | 17.48 | 17.13 |
Protein Annotations
| MapMan:15.5.21 | Gene3D:3.20.90.10 | EntrezGene:831986 | EMBL:AB493753 | EMBL:AC051627 | ProteinID:AED92598.1 |
| ArrayExpress:AT5G18680 | EnsemblPlantsGene:AT5G18680 | RefSeq:AT5G18680 | TAIR:AT5G18680 | RefSeq:AT5G18680-TAIR-G | EnsemblPlants:AT5G18680.1 |
| TAIR:AT5G18680.1 | EMBL:AY046922 | Unigene:At.31402 | Symbol:AtTLP11 | EMBL:BT010768 | EMBL:BT020601 |
| UniProt:C0SVQ0 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0035091 | InterPro:IPR001810 | InterPro:IPR025659 | RefSeq:NP_197369.2 |
| PFAM:PF00646 | PFAM:PF01167 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR01573 | ScanProsite:PS01200 | PANTHER:PTHR16517 | PANTHER:PTHR16517:SF73 |
| UniProt:Q6NPQ1 | SUPFAM:SSF54518 | SUPFAM:SSF81383 | InterPro:Tubby-like_C | InterPro:Tubby_C | InterPro:Tubby_C_CS |
| UniParc:UPI00001624D7 | SEG:seg | : | : | : | : |
Description
TULP11Uncharacterized protein At5g18680 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVQ0]
Coordinates
chr5:-:6228163..6230630
Molecular Weight (calculated)
43053.0 Da
IEP (calculated)
9.936
GRAVY (calculated)
-0.204
Length
389 amino acids
Sequence
(BLAST)
(BLAST)
001: MTLRSLILEM RSRPHRVVHD LAAAAAADST SVSSQDYRWS EIPEELLREI LIRVEAADGG GWPSRRSVVA CAGVCRGWRL LMNETVVVPE ISSKLTFPIS
101: LKQPGPRDSL VQCFIKRNRI TQSYHLYLGL TNSLTDDGKF LLAACKLKHT TCTDYIISLR SDDMSRRSQA YVGKVRSNFL GTKFTVFDGN LLPSTGAAKL
201: RKSRSYNPAK VSAKVPLGSY PVAHITYELN VLGSRGPRKM QCLMDTIPTS TMEPQGVASE PSEFPLLGTR STLSRSQSKP LRSSSSHLKE TPLVLSNKTP
301: RWHEQLRCWC LNFHGRVTVA SVKNFQLVAA GASCGSGTGM SPERQSERII LQFGKVGKDM FTMDYGYPIS AFQAFAICLS SFETRIACE
101: LKQPGPRDSL VQCFIKRNRI TQSYHLYLGL TNSLTDDGKF LLAACKLKHT TCTDYIISLR SDDMSRRSQA YVGKVRSNFL GTKFTVFDGN LLPSTGAAKL
201: RKSRSYNPAK VSAKVPLGSY PVAHITYELN VLGSRGPRKM QCLMDTIPTS TMEPQGVASE PSEFPLLGTR STLSRSQSKP LRSSSSHLKE TPLVLSNKTP
301: RWHEQLRCWC LNFHGRVTVA SVKNFQLVAA GASCGSGTGM SPERQSERII LQFGKVGKDM FTMDYGYPIS AFQAFAICLS SFETRIACE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.