Factsheet for AT1G47270.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015624.1-P	Field mustard	cytosol, mitochondrion	81.36	83.37
CDY65687	Canola	cytosol, mitochondrion	74.09	81.82
Bra040862.1-P	Field mustard	mitochondrion, nucleus	77.48	80.81
CDY17028	Canola	mitochondrion, nucleus	77.0	80.51
GSMUA_Achr2P23080_001	Banana	cytosol	23.24	70.59
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	29.06	67.42
GSMUA_Achr6P09030_001	Banana	cytosol	52.78	60.22
VIT_04s0023g01950.t01	Wine grape	cytosol	58.84	58.84
Solyc04g071750.2.1	Tomato	cytosol	56.66	58.5
Solyc03g033980.2.1	Tomato	cytosol	56.66	57.64
PGSC0003DMT400016310	Potato	cytosol	55.93	57.61
PGSC0003DMT400058090	Potato	cytosol	56.42	57.39
KRH69894	Soybean	cytosol	56.66	56.52
KRH28692	Soybean	cytosol	56.66	56.52
PGSC0003DMT400009280	Potato	cytosol	55.69	56.51
KRH76777	Soybean	cytosol	56.66	56.39
Solyc02g085130.2.1	Tomato	cytosol	55.69	55.96
Solyc02g062670.2.1	Tomato	cytosol	55.45	55.72
PGSC0003DMT400040088	Potato	cytosol	55.21	55.61
GSMUA_Achr2P22940_001	Banana	cytosol	49.39	55.59
AT2G18280.2	Thale cress	cytosol	53.03	55.58
KRH08239	Soybean	cytosol	55.45	55.31
CDY06747	Canola	cytosol, mitochondrion	77.0	55.02
EES07397	Sorghum	cytosol	57.38	54.73
TraesCS6B01G300200.1	Wheat	cytosol	56.17	54.46
TraesCS6D01G252800.1	Wheat	cytosol	55.93	54.35
Zm00001d051568_P001	Maize	cytosol	57.14	54.13
HORVU6Hr1G068970.3	Barley	cytosol	55.93	54.1
Zm00001d017773_P001	Maize	cytosol	57.14	54.0
TraesCS6A01G272800.1	Wheat	cytosol	55.93	53.85
AT2G47900.3	Thale cress	cytosol	49.39	50.12
AT1G25280.1	Thale cress	cytosol	53.03	49.21
AT3G06380.1	Thale cress	mitochondrion	43.83	47.63
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	34.14	47.47
AT1G76900.1	Thale cress	cytosol	52.06	47.25
AT1G43640.1	Thale cress	cytosol	47.94	46.15
AT5G18680.1	Thale cress	mitochondrion	43.1	45.76
AT1G53320.1	Thale cress	mitochondrion	41.16	44.85
GSMUA_Achr2P23070_001	Banana	cytosol, mitochondrion	18.4	38.58
GSMUA_Achr10P...	Banana	nucleus	17.68	34.76
AT1G61940.2	Thale cress	cytosol	21.07	32.83
Zm00001d033948_P004	Maize	cytosol	12.11	27.62
AT1G16070.1	Thale cress	nucleus	20.58	21.41

Protein Annotations

Gene3D:1.20.1280.50	MapMan:15.5.21	Gene3D:3.20.90.10	EntrezGene:841130	ProteinID:AAG52638.1	ProteinID:AEE32146.1
EMBL:AF487268	EMBL:AK228930	ArrayExpress:AT1G47270	EnsemblPlantsGene:AT1G47270	RefSeq:AT1G47270	TAIR:AT1G47270
RefSeq:AT1G47270-TAIR-G	EnsemblPlants:AT1G47270.1	TAIR:AT1G47270.1	Unigene:At.18294	Symbol:AtTLP6	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289	GO:GO:0009058
GO:GO:0009555	GO:GO:0009987	GO:GO:0035091	InterPro:IPR001810	InterPro:IPR025659	RefSeq:NP_001322089.1
RefSeq:NP_175160.2	PFAM:PF00646	PFAM:PF01167	PO:PO:0000013	PO:PO:0000037	PO:PO:0000084
PO:PO:0000230	PO:PO:0000293	PO:PO:0001016	PO:PO:0001017	PO:PO:0001054	PO:PO:0001078
PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098
PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019
PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029
PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052
PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025195
PO:PO:0025281	PRINTS:PR01573	ScanProsite:PS01200	PANTHER:PTHR16517	PANTHER:PTHR16517:SF75	UniProt:Q0WPY0
SUPFAM:SSF54518	SUPFAM:SSF81383	Symbol:TLP6	InterPro:Tubby-like_C	InterPro:Tubby_C	InterPro:Tubby_C_CS
UniParc:UPI0000197005	SEG:seg	:	:	:	:

Description

TULP6Tubby-like F-box protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q0WPY0]

Coordinates

chr1:+:17326556..17328728

Molecular Weight (calculated)

46067.9 Da

IEP (calculated)

10.301

GRAVY (calculated)

-0.285

Length

413 amino acids

Sequence
(BLAST)

001: MDLSLLLPKR SWEISGGADK ISRVAMSLKN IVKNKYKAIG RRGRSHIAPE GSSVSSSLST NEGLNQSIWV DLPPELLLDI IQRIESEQSL WPGRRDVVAC
101: ASVCKSWREM TKEVVKVPEL SGLITFPISL RQPGPRDAPI QCFIKRERAT GIYRLYLGLS PALSGDKSKL LLSAKRVRRA TGAEFVVSLS GNDFSRSSSN
201: YIGKLRSNFL GTKFTVYENQ PPPFNRKLPP SMQVSPWVSS SSSSYNIASI LYELNVLRTR GPRRMQCIMH SIPISAIQEG GKIQSPTEFT NQGKKKKKPL
301: MDFCSGNLGG ESVIKEPLIL KNKSPRWHEQ LQCWCLNFKG RVTVASVKNF QLVAAAAEAG KNMNIPEEEQ DRVILQFGKI GKDIFTMDYR YPISAFQAFA
401: ICLSSFDTKP VCE

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.