Factsheet for TraesCS6A01G272800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G252800.1	Wheat	cytosol	97.67	98.59
TraesCS6B01G300200.1	Wheat	cytosol	97.67	98.36
HORVU6Hr1G068970.3	Barley	cytosol	97.44	97.89
Os02t0705300-01	Rice	cytosol	88.34	88.55
EES07397	Sorghum	cytosol	85.78	84.99
Zm00001d017773_P001	Maize	cytosol	86.25	84.67
Zm00001d051568_P001	Maize	cytosol	84.85	83.49
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	33.8	81.46
GSMUA_Achr2P23080_001	Banana	cytosol	24.48	77.21
GSMUA_Achr6P09030_001	Banana	cytosol	62.94	74.59
VIT_04s0023g01950.t01	Wine grape	cytosol	69.23	71.91
KRH76777	Soybean	cytosol	67.83	70.12
KRH28692	Soybean	cytosol	67.37	69.81
Solyc04g071750.2.1	Tomato	cytosol	63.87	68.5
PGSC0003DMT400016310	Potato	cytosol	63.87	68.33
GSMUA_Achr2P22940_001	Banana	cytosol	58.28	68.12
VIT_18s0001g12660.t01	Wine grape	cytosol	65.97	68.03
Solyc03g033980.2.1	Tomato	cytosol	64.1	67.73
KRH08239	Soybean	cytosol	65.27	67.63
PGSC0003DMT400058090	Potato	cytosol	63.64	67.24
KRH69894	Soybean	cytosol	64.34	66.67
PGSC0003DMT400009280	Potato	cytosol	62.7	66.09
Solyc02g085130.2.1	Tomato	cytosol	62.94	65.69
Solyc02g062670.2.1	Tomato	cytosol	62.94	65.69
PGSC0003DMT400040088	Potato	cytosol	62.7	65.61
KRH15179	Soybean	cytosol	64.1	65.01
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	42.89	61.95
Bra039620.1-P	Field mustard	cytosol	54.08	61.38
CDY46301	Canola	cytosol	54.08	61.38
CDY25159	Canola	cytosol	53.15	60.8
KRH05837	Soybean	mitochondrion	64.1	60.57
AT2G18280.2	Thale cress	cytosol	55.24	60.15
CDY10578	Canola	mitochondrion	5.83	59.52
AT1G47270.1	Thale cress	nucleus	53.85	55.93
CDY65687	Canola	cytosol, mitochondrion	48.72	55.88
Bra040862.1-P	Field mustard	mitochondrion, nucleus	51.05	55.3
CDY17028	Canola	mitochondrion, nucleus	50.58	54.94
Bra015624.1-P	Field mustard	cytosol, mitochondrion	51.52	54.84
TraesCS2A01G120900.1	Wheat	mitochondrion	46.39	52.93
GSMUA_Achr2P23070_001	Banana	cytosol, mitochondrion	24.01	52.28
TraesCS4A01G209000.1	Wheat	cytosol, mitochondrion	53.61	52.27
TraesCS4A01G140800.1	Wheat	cytosol, plastid	48.95	52.24
TraesCS5A01G124100.1	Wheat	cytosol	53.38	52.16
TraesCS1A01G273100.1	Wheat	mitochondrion	53.61	50.44
TraesCS7A01G326400.1	Wheat	golgi	52.91	49.78
TraesCS1A01G333900.1	Wheat	mitochondrion	42.89	49.33
TraesCS3A01G270800.1	Wheat	cytosol	40.56	49.01
TraesCS3A01G378300.1	Wheat	mitochondrion	49.88	47.66
TraesCS2A01G574000.1	Wheat	golgi	50.12	45.65
GSMUA_Achr10P...	Banana	nucleus	22.14	45.24
Zm00001d033948_P004	Maize	cytosol	15.62	37.02
CDY06747	Canola	cytosol, mitochondrion	49.42	36.68
TraesCS6A01G149400.1	Wheat	plastid	18.18	19.5

Protein Annotations

Gene3D:1.20.1280.50	MapMan:15.5.21	Gene3D:3.20.90.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR025659	PFAM:PF00646	PFAM:PF01167
PRINTS:PR01573	ScanProsite:PS01200	ScanProsite:PS01201	PANTHER:PTHR16517	PANTHER:PTHR16517:SF75	SUPFAM:SSF54518
SUPFAM:SSF81383	EnsemblPlantsGene:TraesCS6A01G272800	EnsemblPlants:TraesCS6A01G272800.1	InterPro:Tubby-like_C	InterPro:Tubby_C	InterPro:Tubby_C_CS
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6A:+:499397477..499400700

Molecular Weight (calculated)

47324.9 Da

IEP (calculated)

10.003

GRAVY (calculated)

-0.360

Length

429 amino acids

Sequence
(BLAST)

001: MSLKSIVREL KEMRDGIGSM SRRGGVTDGR AGHGHGRGGS RHSWPSLWPE PQPQPPRPGQ EPQQQGQWAN LPPELLIDVI QRVEASEVAW PARRHVVACA
101: AVCRSWREVT KDVVKTLEEC SRITFPISLK QPGPRDSPVQ CFVRRDRATS TYLLYLGLSP SLHGENDKLL LAARKIRRAA RTSFVISLIS DDFSHSSSTY
201: VGKLKPNFLG TKFTIFDSQP PCDAAVLPNN KPSKRHSKQV SPRLPLGNYN VATVSYELTV LRNRGPRRMQ CTMHSIPAVC IQEGGKAPTP TGMVHSLDEQ
301: VSTLSTSGKG KVPNIEFSST SLSADLSGPI STSEAPLLLK NKAPRWHEQL QCWCLNFRGR VTVASVKNFQ LVASVDPSLG VPAAEQEKVI LQFGKIGKDI
401: FTMDYRYPLS AFQAFAICLT SFDTKPACE

Best Arabidopsis Sequence Match ( AT2G18280.2 )
(BLAST)

001: MSLKSILRDL KEVRDGLGGI SKRSWSKSSH IAPDQTTPPL DNIPQSPWAS LPPELLHDII WRVEESETAW PARAAVVSCA SVCKSWRGIT MEIVRIPEQC
101: GKLTFPISLK QPGPRDSPIQ CFIKRNRATA TYILYYGLMP SETENDKLLL AARRIRRATC TDFIISLSAK NFSRSSSTYV GKLRSGFLGT KFTIYDNQTA
201: SSTAQAQPNR RLHPKQAAPK LPTNSSTVGN ITYELNVLRT RGPRRMHCAM DSIPLSSVIA EPSVVQGIEE EVSSSPSPKG ETITTDKEIP DNSPSLRDQP
301: LVLKNKSPRW HEQLQCWCLN FKGRVTVASV KNFQLVAEID ASLDAPPEEH ERVILQFGKI GKDIFTMDYR YPLSAFQAFA ICISSFDTKP ACEG

Arabidopsis Description

TULP2Tubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:B9DGB6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.