Factsheet for TraesCS6B01G300200.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G252800.1	Wheat	cytosol	98.36	98.59
HORVU6Hr1G068970.3	Barley	cytosol	98.12	97.89
TraesCS6A01G272800.1	Wheat	cytosol	98.36	97.67
Os02t0705300-01	Rice	cytosol	89.67	89.25
EES07397	Sorghum	cytosol	87.32	85.91
Zm00001d017773_P001	Maize	cytosol	87.79	85.58
Zm00001d051568_P001	Maize	cytosol	86.15	84.17
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	34.04	81.46
GSMUA_Achr2P23080_001	Banana	cytosol	24.65	77.21
GSMUA_Achr6P09030_001	Banana	cytosol	63.38	74.59
VIT_04s0023g01950.t01	Wine grape	cytosol	69.48	71.67
KRH76777	Soybean	cytosol	68.31	70.12
KRH28692	Soybean	cytosol	67.84	69.81
Solyc04g071750.2.1	Tomato	cytosol	64.32	68.5
GSMUA_Achr2P22940_001	Banana	cytosol	58.92	68.39
Solyc03g033980.2.1	Tomato	cytosol	64.79	67.98
PGSC0003DMT400016310	Potato	cytosol	63.85	67.83
VIT_18s0001g12660.t01	Wine grape	cytosol	65.96	67.55
PGSC0003DMT400058090	Potato	cytosol	64.08	67.24
KRH08239	Soybean	cytosol	65.26	67.15
KRH69894	Soybean	cytosol	64.55	66.43
PGSC0003DMT400009280	Potato	cytosol	63.15	66.09
Solyc02g062670.2.1	Tomato	cytosol	63.62	65.94
PGSC0003DMT400040088	Potato	cytosol	63.38	65.85
Solyc02g085130.2.1	Tomato	cytosol	63.38	65.69
KRH15179	Soybean	cytosol	64.08	64.54
Bra039620.1-P	Field mustard	cytosol	54.69	61.64
CDY46301	Canola	cytosol	54.69	61.64
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	42.96	61.62
CDY25159	Canola	cytosol	53.76	61.07
KRH05837	Soybean	mitochondrion	64.55	60.57
AT2G18280.2	Thale cress	cytosol	55.87	60.41
CDY10578	Canola	mitochondrion	5.87	59.52
AT1G47270.1	Thale cress	nucleus	54.46	56.17
CDY65687	Canola	cytosol, mitochondrion	48.83	55.62
Bra040862.1-P	Field mustard	mitochondrion, nucleus	51.41	55.3
Bra015624.1-P	Field mustard	cytosol, mitochondrion	52.11	55.09
CDY17028	Canola	mitochondrion, nucleus	50.94	54.94
TraesCS4B01G112600.1	Wheat	cytosol, mitochondrion	54.69	52.95
TraesCS4B01G166400.1	Wheat	cytosol, plastid	50.0	52.72
TraesCS2B01G141800.1	Wheat	cytosol	46.71	52.65
GSMUA_Achr2P23070_001	Banana	cytosol, mitochondrion	24.18	52.28
TraesCS5B01G123800.1	Wheat	golgi	53.76	52.16
TraesCS1B01G282900.1	Wheat	mitochondrion	54.23	50.88
TraesCS1B01G347200.1	Wheat	mitochondrion	43.9	50.13
TraesCS3B01G304600.1	Wheat	cytosol	40.85	49.57
TraesCS7B01G227000.1	Wheat	mitochondrion	53.29	49.56
TraesCS3B01G411000.1	Wheat	mitochondrion	50.7	48.0
GSMUA_Achr10P...	Banana	nucleus	22.3	45.24
TraesCS2B01G613800.1	Wheat	mitochondrion, nucleus	50.0	45.13
Zm00001d033948_P004	Maize	cytosol	15.73	37.02
CDY06747	Canola	cytosol, mitochondrion	50.0	36.85
TraesCS6B01G177300.1	Wheat	plastid	21.36	23.21

Protein Annotations

Gene3D:1.20.1280.50	MapMan:15.5.21	Gene3D:3.20.90.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR025659	PFAM:PF00646	PFAM:PF01167
PRINTS:PR01573	ScanProsite:PS01200	ScanProsite:PS01201	PANTHER:PTHR16517	PANTHER:PTHR16517:SF75	SUPFAM:SSF54518
SUPFAM:SSF81383	EnsemblPlantsGene:TraesCS6B01G300200	EnsemblPlants:TraesCS6B01G300200.1	InterPro:Tubby-like_C	InterPro:Tubby_C	InterPro:Tubby_C_CS
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6B:+:538364580..538367228

Molecular Weight (calculated)

47141.6 Da

IEP (calculated)

9.911

GRAVY (calculated)

-0.392

Length

426 amino acids

Sequence
(BLAST)

001: MSLKSIVREL KEMRDGIGSM SRRGGVSDGR AGHGRGGSRH SWPSLWPEPQ PQPQRQGQEP QQQGQWANLP PELLIDVIQR VEASEVAWPA RRHVVACAAV
101: CRSWREVTKD VVKTLEECSR ITFPISLKQP GPRDSPVQCF VRRDRATSTY LLYLGLSPSL HGENDKLLLA ARKIRRAART SFVISLISDD FSHSSSTYVG
201: KLKPNFLGTK FTIFDSQPPC DAAVLPNNKP SKRHSKQVSP RLPLGNYNVA TVSYELTVLR NRGPRRMQCT MHSIPAACIQ EGGKAPTPTG MVHSLDEQVS
301: TLSTSKGKEP NMEFSSTSLS ADLSGPISTS EAPLLLKNKA PRWHEQLQCW CLNFRGRVTV ASVKNFQLVA SVDPSLGVPA AEQEKVILQF GKIGKDIFTM
401: DYRYPLSAFQ AFAICLTSFD TKPACE

Best Arabidopsis Sequence Match ( AT2G18280.2 )
(BLAST)

001: MSLKSILRDL KEVRDGLGGI SKRSWSKSSH IAPDQTTPPL DNIPQSPWAS LPPELLHDII WRVEESETAW PARAAVVSCA SVCKSWRGIT MEIVRIPEQC
101: GKLTFPISLK QPGPRDSPIQ CFIKRNRATA TYILYYGLMP SETENDKLLL AARRIRRATC TDFIISLSAK NFSRSSSTYV GKLRSGFLGT KFTIYDNQTA
201: SSTAQAQPNR RLHPKQAAPK LPTNSSTVGN ITYELNVLRT RGPRRMHCAM DSIPLSSVIA EPSVVQGIEE EVSSSPSPKG ETITTDKEIP DNSPSLRDQP
301: LVLKNKSPRW HEQLQCWCLN FKGRVTVASV KNFQLVAEID ASLDAPPEEH ERVILQFGKI GKDIFTMDYR YPLSAFQAFA ICISSFDTKP ACEG

Arabidopsis Description

TULP2Tubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:B9DGB6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.