Factsheet for Bra040862.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, mitochondrion

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra014159.1-P
Bra018756.1-P
Bra018757.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G47270.1	Bra014159.1-P	AT3G60010.1	25168737
AT1G47270.1	Bra018756.1-P	AT3G60010.1	25168737
AT1G47270.1	Bra018757.1-P	AT3G60010.1	25168737

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17028	Canola	mitochondrion, nucleus	98.23	98.48
Bra015624.1-P	Field mustard	cytosol, mitochondrion	85.1	83.62
AT1G47270.1	Thale cress	nucleus	80.81	77.48
GSMUA_Achr2P23080_001	Banana	cytosol	22.47	65.44
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	28.03	62.36
GSMUA_Achr6P09030_001	Banana	cytosol	53.54	58.56
Solyc04g071750.2.1	Tomato	cytosol	58.84	58.25
Bra039620.1-P	Field mustard	cytosol	55.56	58.2
Solyc03g033980.2.1	Tomato	cytosol	58.84	57.39
PGSC0003DMT400016310	Potato	cytosol	58.08	57.36
PGSC0003DMT400058090	Potato	cytosol	58.33	56.9
VIT_04s0023g01950.t01	Wine grape	cytosol	58.59	56.17
PGSC0003DMT400040088	Potato	cytosol	58.08	56.1
PGSC0003DMT400009280	Potato	cytosol	57.58	56.02
KRH28692	Soybean	cytosol	58.33	55.8
Solyc02g062670.2.1	Tomato	cytosol	57.58	55.47
Solyc02g085130.2.1	Tomato	cytosol	57.58	55.47
KRH76777	Soybean	cytosol	57.83	55.18
KRH69894	Soybean	cytosol	57.58	55.07
KRH08239	Soybean	cytosol	56.57	54.11
GSMUA_Achr2P22940_001	Banana	cytosol	49.75	53.68
EES07397	Sorghum	cytosol	57.32	52.42
Zm00001d051568_P001	Maize	cytosol	57.07	51.83
TraesCS6D01G252800.1	Wheat	cytosol	55.56	51.76
HORVU6Hr1G068970.3	Barley	cytosol	55.81	51.76
Zm00001d017773_P001	Maize	cytosol	57.07	51.72
TraesCS6B01G300200.1	Wheat	cytosol	55.3	51.41
Bra020754.1-P	Field mustard	cytosol	44.44	51.16
TraesCS6A01G272800.1	Wheat	cytosol	55.3	51.05
Bra024763.1-P	Field mustard	cytosol	55.3	50.0
Bra021446.1-P	Field mustard	cytosol	50.76	50.0
Bra012486.1-P	Field mustard	cytosol	55.3	49.44
Bra010985.1-P	Field mustard	cytosol	54.29	48.97
Bra002179.1-P	Field mustard	mitochondrion	46.72	46.37
Bra040803.1-P	Field mustard	cytosol	52.27	46.31
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	34.09	45.45
Bra041095.1-P	Field mustard	cytosol, mitochondrion	42.42	44.56
Bra015711.1-P	Field mustard	cytosol, mitochondrion	51.77	44.09
Bra030942.1-P	Field mustard	mitochondrion	42.42	42.86
GSMUA_Achr2P23070_001	Banana	cytosol, mitochondrion	18.69	37.56
GSMUA_Achr10P...	Banana	nucleus	18.69	35.24
Zm00001d033948_P004	Maize	cytosol	14.14	30.94
Bra026081.1-P	Field mustard	nucleus	19.7	20.05

Protein Annotations

Gene3D:1.20.1280.50	MapMan:15.5.21	Gene3D:3.20.90.10	EnsemblPlantsGene:Bra040862	EnsemblPlants:Bra040862.1	EnsemblPlants:Bra040862.1-P
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810
InterPro:IPR025659	UniProt:M4FID3	PFAM:PF00646	PFAM:PF01167	PRINTS:PR01573	ScanProsite:PS01200
PANTHER:PTHR16517	PANTHER:PTHR16517:SF75	SUPFAM:SSF54518	SUPFAM:SSF81383	InterPro:Tubby-like_C	InterPro:Tubby_C
InterPro:Tubby_C_CS	UniParc:UPI000253E9CD	SEG:seg	:	:	:

Description

AT1G47270 (E=3e-178) AtTLP6 | AtTLP6 (TUBBY LIKE PROTEIN 6); phosphoric diester hydrolase/ transcription factor

Coordinates

chrScaffold000283:-:26074..27491

Molecular Weight (calculated)

44430.7 Da

IEP (calculated)

10.410

GRAVY (calculated)

-0.371

Length

396 amino acids

Sequence
(BLAST)

001: MPLKNIVREL RGRNNKANGR RGRSHIAPEG SSPSPSAADD CLYQSVWVDL PPELLLDIIH RIESGQTSWP GRRDVVACAS VCKAWREMTK EVVKVPEISG
101: LLTFPVSLKQ PGPRDDPIQC FIKRERATGI YRLYLGLSPA LTGDKSKLLL SAKRVRRATG VEFIVSLSGK DFSRSSSNYI GKLRSNFLGT KFTVYENQPS
201: PVDSRRSFNK KLSQTMRVSP WVTSSTHSYS MASILYELNV LRTRGPRRMQ CIMNTIPVSS IQEGGQIHTP TELSNLGSKK KRGLIDFWSG NLGGESVVKE
301: PLVLKNKLPR WHEQLQCWCL NFKGRVTVAS VKNFQLMAAA AEAGKDMNIP EEEQERVILQ FGKIGKDTFT MDYRYPISAF QAFAICLSSF DTKPVR

Best Arabidopsis Sequence Match ( AT1G47270.1 )
(BLAST)

001: MDLSLLLPKR SWEISGGADK ISRVAMSLKN IVKNKYKAIG RRGRSHIAPE GSSVSSSLST NEGLNQSIWV DLPPELLLDI IQRIESEQSL WPGRRDVVAC
101: ASVCKSWREM TKEVVKVPEL SGLITFPISL RQPGPRDAPI QCFIKRERAT GIYRLYLGLS PALSGDKSKL LLSAKRVRRA TGAEFVVSLS GNDFSRSSSN
201: YIGKLRSNFL GTKFTVYENQ PPPFNRKLPP SMQVSPWVSS SSSSYNIASI LYELNVLRTR GPRRMQCIMH SIPISAIQEG GKIQSPTEFT NQGKKKKKPL
301: MDFCSGNLGG ESVIKEPLIL KNKSPRWHEQ LQCWCLNFKG RVTVASVKNF QLVAAAAEAG KNMNIPEEEQ DRVILQFGKI GKDIFTMDYR YPISAFQAFA
401: ICLSSFDTKP VCE

Arabidopsis Description

TULP6Tubby-like F-box protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q0WPY0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.