Factsheet for TraesCS6B01G177300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G141400.1
TraesCS2B01G166400.1
TraesCS2D01G144900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G16070.1	TraesCS2A01G141400.1	AT2G04620.1	16792696
AT1G16070.1	TraesCS2B01G166400.1	AT2G04620.1	16792696
AT1G16070.1	TraesCS2D01G144900.1	AT2G04620.1	16792696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G029710.3	Barley	plastid	95.66	94.94
TraesCS6D01G138700.1	Wheat	plastid	88.78	89.23
TraesCS6A01G149400.1	Wheat	plastid	90.56	88.75
Zm00001d015485_P001	Maize	plastid	77.81	75.87
KXG29622	Sorghum	plastid	80.61	74.53
GSMUA_Achr1P10180_001	Banana	cytosol, mitochondrion, nucleus, plastid	50.51	53.95
VIT_09s0018g01630.t01	Wine grape	cytosol	51.79	53.85
Os02t0179400-00	Rice	nucleus	53.06	50.36
KRH23693	Soybean	plastid	45.66	50.28
Solyc03g117730.2.1	Tomato	cytosol	48.98	47.29
AT1G16070.1	Thale cress	nucleus	47.19	46.6
Bra026081.1-P	Field mustard	nucleus	46.17	46.53
CDY35067	Canola	nucleus	46.17	46.53
PGSC0003DMT400036862	Potato	nucleus	49.23	46.39
CDY69989	Canola	nucleus	46.17	46.17
TraesCS6B01G300200.1	Wheat	cytosol	23.21	21.36
TraesCS1B01G347200.1	Wheat	mitochondrion	19.64	20.64
TraesCS3B01G304600.1	Wheat	cytosol	18.37	20.51
TraesCS5B01G123800.1	Wheat	golgi	22.19	19.82
TraesCS7B01G227000.1	Wheat	mitochondrion	22.96	19.65
TraesCS4B01G112600.1	Wheat	cytosol, mitochondrion	21.17	18.86
TraesCS4B01G166400.1	Wheat	cytosol, plastid	18.88	18.32
TraesCS2B01G141800.1	Wheat	cytosol	17.6	18.25
TraesCS1B01G282900.1	Wheat	mitochondrion	20.92	18.06
TraesCS3B01G411000.1	Wheat	mitochondrion	20.15	17.56
TraesCS2B01G613800.1	Wheat	mitochondrion, nucleus	20.66	17.16

Protein Annotations

EnsemblPlants:TraesCS6B01G177300.1	EnsemblPlantsGene:TraesCS6B01G177300	Gene3D:3.20.90.10	InterPro:IPR025659	InterPro:Tubby-like_C	InterPro:Tubby_C
PANTHER:PTHR16517	PANTHER:PTHR16517:SF27	PFAM:PF01167	PRINTS:PR01573	SEG:seg	SUPFAM:SSF54518
MapMan:15.5.21	:	:	:	:	:

Description

No Description!

Coordinates

chr6B:+:195126674..195128767

Molecular Weight (calculated)

42964.6 Da

IEP (calculated)

10.432

GRAVY (calculated)

-0.463

Length

392 amino acids

Sequence
(BLAST)

001: MAATPPKREP LAPLSCNAAA DTPAAAARPR APAVSAEKEN LGAANLGPGK EEKRATPAAA KAAPLRPSSL QARMEGEEAP LATATAAGLP VFVGPRRREL
101: LPPPPPPASS SYEAWDLSDN EAAPAASWAT LPNRALLCRP LPLDVGRCTC VVVREKATGA RGVALYSLYT NEGQGRQDRK LAVARHRRRR GRSEFIVAQN
201: QDGVFCSSDK NFLGTMGANL VGSKYQIWGQ GNRVDELKSQ SKRLLGVIAF APTITTLTGS FRSMRAWIPK NQSMQLRTNS SAQIQHVSGL PKDWQEKRSR
301: ADQLCSRSPF YNNMTKRYEL DFRERVGRMG YKVQTSVKNF QMTLEENGRQ TILQLGRVGK SKYIMDFRYP LTGYQAFCIC LASMDSKLCC TL

Best Arabidopsis Sequence Match ( AT1G16070.1 )
(BLAST)

001: MAGSRKVNDL LEENKGNVDT ITGSLSTQKG EDKENVSPEK VSTSVETRKL DRALKSQSMK GNSGFPTEVT NFKSFSTGGR TALKQSSLQA CMQKNSEVDK
101: SSFGMKTWTS VDSEHSSSLK VWEFSDSEAA PASSWSTLPN RALLCKTLPL DVGRCTCLIV KEQSPEGLSH GSVYSLYTHE GRGRKDRKLA VAYHSRRNGK
201: SIFRVAQNVK GLLCSSDESY VGSMTANLLG SKYYIWDKGV RVGSVGKMVK PLLSVVIFTP TITTWTGSYR RMRTLLPKQQ PMQKNNNKQV QQASKLPLDW
301: LENKEKIQKL CSRIPHYNKI SKQHELDFRD RGRTGLRIQS SVKNFQLTLT ETPRQTILQM GRVDKARYVI DFRYPFSGYQ AFCICLASID SKLCCTV

Arabidopsis Description

TULP8TLP8 [Source:UniProtKB/TrEMBL;Acc:A0A178WHW0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.