Factsheet for TraesCS2A01G120900.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 4
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G122900.1	Wheat	cytosol	97.07	97.59
TraesCS2B01G141800.1	Wheat	cytosol	97.34	96.83
VIT_01s0010g01060.t01	Wine grape	mitochondrion	9.84	68.52
Os07t0667000-01	Rice	cytosol	73.4	67.98
EER97690	Sorghum	cytosol	68.35	64.41
TraesCS4A01G140800.1	Wheat	cytosol, plastid	67.82	63.43
GSMUA_Achr1P11290_001	Banana	cytosol	64.63	59.85
GSMUA_Achr3P17440_001	Banana	cytosol	62.77	58.56
VIT_07s0104g01290.t01	Wine grape	cytosol	62.5	58.02
PGSC0003DMT400029513	Potato	cytosol	60.9	57.83
Solyc09g074510.2.1	Tomato	cytosol	60.37	57.32
CDY27467	Canola	cytosol	59.04	55.92
KRH71532	Soybean	cytosol	59.31	55.75
AT2G47900.3	Thale cress	cytosol	60.11	55.53
CDY55525	Canola	cytosol	59.04	55.22
Bra021446.1-P	Field mustard	cytosol	59.04	55.22
Zm00001d007106_P001	Maize	cytosol	45.21	54.49
TraesCS3A01G270800.1	Wheat	cytosol	45.74	48.45
TraesCS6A01G272800.1	Wheat	cytosol	52.93	46.39
TraesCS1A01G333900.1	Wheat	mitochondrion	45.48	45.84
TraesCS5A01G124100.1	Wheat	cytosol	53.46	45.79
TraesCS4A01G209000.1	Wheat	cytosol, mitochondrion	53.19	45.45
TraesCS1A01G273100.1	Wheat	mitochondrion	54.79	45.18
VIT_01s0010g01050.t01	Wine grape	cytosol	15.69	43.7
TraesCS7A01G326400.1	Wheat	golgi	52.66	43.42
TraesCS3A01G378300.1	Wheat	mitochondrion	51.06	42.76
TraesCS2A01G574000.1	Wheat	golgi	52.66	42.04
VIT_00s0426g00050.t01	Wine grape	extracellular	15.96	37.74
Zm00001d029092_P001	Maize	mitochondrion	23.67	25.72
Zm00001d047019_P001	Maize	mitochondrion	23.67	25.72
Zm00001d039784_P001	Maize	mitochondrion, nucleus, peroxisome, plastid	12.77	17.52
TraesCS6A01G149400.1	Wheat	plastid	15.43	14.5

Protein Annotations

Gene3D:1.20.1280.50	MapMan:15.5.21	Gene3D:3.20.90.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR025659	PFAM:PF00646	PFAM:PF01167
PRINTS:PR01573	ScanProsite:PS01200	PANTHER:PTHR16517	PANTHER:PTHR16517:SF36	SUPFAM:SSF54518	SUPFAM:SSF81383
EnsemblPlantsGene:TraesCS2A01G120900	EnsemblPlants:TraesCS2A01G120900.1	InterPro:Tubby-like_C	InterPro:Tubby_C	InterPro:Tubby_C_CS	SEG:seg

Description

No Description!

Coordinates

chr2A:-:70871964..70874771

Molecular Weight (calculated)

42246.9 Da

IEP (calculated)

10.084

GRAVY (calculated)

-0.343

Length

376 amino acids

Sequence
(BLAST)

001: MPFRSMVREM RGEVDAIARR RPLPSSARGV RRVAAVAPPG EEAARQGCCW AELPPELLRE VLARVEASEP RWPRRRDVVA CAGVCRTWRG VVREIVRVPE
101: VSGRLTFPIS LKQPGPRDAP IKCFIRRHRA TQTYFLYIGL TDSLADAGKF LLAARKYHRP TCTEYLISLD KTDMSKGSQT CVGKLRSNFL RTKFTVYDAH
201: PPHAGPVVPK RWPAGDYPVI QINYEVNVLG SRGPRRMNCI MDSIPVSAIE HGGTAPTQTA FPFFNPKSSR MDSSITPLSS QVESKLVLKN KSPRWHEHLR
301: CWCLNFHGRV TVASVKNFQL VASDESAPAN EENDDTTLQF GKIGKDLFTL DYRYPVSAFQ AFAICLSSFD TKLARE

Best Arabidopsis Sequence Match ( AT5G18680.1 )
(BLAST)

001: MTLRSLILEM RSRPHRVVHD LAAAAAADST SVSSQDYRWS EIPEELLREI LIRVEAADGG GWPSRRSVVA CAGVCRGWRL LMNETVVVPE ISSKLTFPIS
101: LKQPGPRDSL VQCFIKRNRI TQSYHLYLGL TNSLTDDGKF LLAACKLKHT TCTDYIISLR SDDMSRRSQA YVGKVRSNFL GTKFTVFDGN LLPSTGAAKL
201: RKSRSYNPAK VSAKVPLGSY PVAHITYELN VLGSRGPRKM QCLMDTIPTS TMEPQGVASE PSEFPLLGTR STLSRSQSKP LRSSSSHLKE TPLVLSNKTP
301: RWHEQLRCWC LNFHGRVTVA SVKNFQLVAA GASCGSGTGM SPERQSERII LQFGKVGKDM FTMDYGYPIS AFQAFAICLS SFETRIACE

Arabidopsis Description

TULP11Uncharacterized protein At5g18680 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVQ0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.