Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_01s0010g01060.t01 | Wine grape | mitochondrion | 12.84 | 96.3 |
| VIT_12s0028g00190.t01 | Wine grape | cytosol, extracellular, mitochondrion, plastid | 12.84 | 88.14 |
| PGSC0003DMT400029513 | Potato | cytosol | 81.23 | 83.08 |
| Solyc09g074510.2.1 | Tomato | cytosol | 80.74 | 82.58 |
| AT2G47900.3 | Thale cress | cytosol | 82.96 | 82.56 |
| Bra021446.1-P | Field mustard | cytosol | 80.49 | 81.09 |
| CDY27467 | Canola | cytosol | 79.26 | 80.86 |
| CDY55525 | Canola | cytosol | 79.75 | 80.35 |
| VIT_05s0020g01930.t01 | Wine grape | cytosol | 68.64 | 79.43 |
| GSMUA_Achr1P11290_001 | Banana | cytosol | 79.26 | 79.06 |
| KRH71532 | Soybean | cytosol | 77.78 | 78.75 |
| GSMUA_Achr3P17440_001 | Banana | cytosol | 77.78 | 78.16 |
| Os03t0351400-01 | Rice | cytosol | 54.07 | 73.99 |
| KXG39376 | Sorghum | cytosol, plastid | 72.59 | 73.68 |
| Zm00001d029165_P004 | Maize | cytosol, plastid | 72.1 | 72.82 |
| TraesCS4D01G164200.1 | Wheat | cytosol, plastid | 71.11 | 71.29 |
| TraesCS4B01G166400.1 | Wheat | cytosol, plastid | 71.11 | 71.29 |
| TraesCS4A01G140800.1 | Wheat | cytosol, plastid | 70.62 | 71.14 |
| Os07t0667000-01 | Rice | cytosol | 66.67 | 66.5 |
| TraesCS2D01G122900.1 | Wheat | cytosol | 58.27 | 63.1 |
| EER97690 | Sorghum | cytosol | 61.98 | 62.91 |
| TraesCS2A01G120900.1 | Wheat | mitochondrion | 58.02 | 62.5 |
| TraesCS2B01G141800.1 | Wheat | cytosol | 58.27 | 62.43 |
| VIT_18s0072g00630.t01 | Wine grape | cytosol | 61.48 | 58.59 |
| VIT_04s0023g01950.t01 | Wine grape | cytosol | 59.26 | 58.11 |
| VIT_01s0010g01050.t01 | Wine grape | cytosol | 19.26 | 57.78 |
| Zm00001d007106_P001 | Maize | cytosol | 43.95 | 57.05 |
| VIT_12s0055g00460.t01 | Wine grape | mitochondrion | 59.26 | 56.6 |
| VIT_18s0001g12660.t01 | Wine grape | cytosol | 58.02 | 56.49 |
| VIT_00s0426g00050.t01 | Wine grape | extracellular | 20.0 | 50.94 |
| VIT_19s0014g01250.t01 | Wine grape | mitochondrion | 49.38 | 49.88 |
| Zm00001d029092_P001 | Maize | mitochondrion | 23.95 | 28.03 |
| Zm00001d047019_P001 | Maize | mitochondrion | 23.95 | 28.03 |
| VIT_09s0018g01630.t01 | Wine grape | cytosol | 20.99 | 22.55 |
| Zm00001d039784_P001 | Maize | mitochondrion, nucleus, peroxisome, plastid | 12.84 | 18.98 |
Protein Annotations
| EntrezGene:100244335 | wikigene:100244335 | MapMan:15.5.21 | Gene3D:3.20.90.10 | ProteinID:CCB56775 | ProteinID:CCB56775.1 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | UniProt:F6HQ19 | EMBL:FN596005 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0008289 | GO:GO:0035091 | InterPro:IPR001810 | InterPro:IPR025659 | EntrezGene:LOC100244335 |
| wikigene:LOC100244335 | PFAM:PF00646 | PFAM:PF01167 | PRINTS:PR01573 | ScanProsite:PS01201 | PANTHER:PTHR16517 |
| PANTHER:PTHR16517:SF36 | SUPFAM:SSF54518 | SUPFAM:SSF81383 | TIGR:TC52916 | TIGR:TC66949 | InterPro:Tubby-like_C |
| InterPro:Tubby_C | InterPro:Tubby_C_CS | UniParc:UPI00019837B3 | ArrayExpress:VIT_07s0104g01290 | EnsemblPlantsGene:VIT_07s0104g01290 | EnsemblPlants:VIT_07s0104g01290.t01 |
| unigene:Vvi.6835 | RefSeq:XP_002269323 | RefSeq:XP_002269323.1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr7:+:2323977..2329086
Molecular Weight (calculated)
45186.2 Da
IEP (calculated)
10.019
GRAVY (calculated)
-0.346
Length
405 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFKSIIQDM RGEFGSISRK GFEVKFNYGL RSRSHRVVQD SSMVVDALRQ SCWANMPPEL LRDVLMRIEA SESTWPPRKN VVACAGVCRS WREITKEIVK
101: TPELSGKLTF PISLKQPGPR GSLLQCYIKR NRSNQTYHLY LGLNQASTDD GKFLLAARKC RRPTCTDYII SLNADDVSKG STTYIGKLRS NFLGTKFTVY
201: DAQPPNAGAR ISKSRSTRRL GSRQVSPRVP AGNYPVAHIS YELNVLGSRG PRRMQCVMDA IPANAIEPGG VAPTQTEFVL SNVDSFPSFP FFRSKSNRTE
301: SLHSGPLSGP KDEMLVLKNK APRWHEQLQC WCLNFNGRVT VASVKNFQLV ASAENGVAGQ EHENVILQFG KVGKDVFTMD YQYPISAFQA FAICLSSFDT
401: KIACE
101: TPELSGKLTF PISLKQPGPR GSLLQCYIKR NRSNQTYHLY LGLNQASTDD GKFLLAARKC RRPTCTDYII SLNADDVSKG STTYIGKLRS NFLGTKFTVY
201: DAQPPNAGAR ISKSRSTRRL GSRQVSPRVP AGNYPVAHIS YELNVLGSRG PRRMQCVMDA IPANAIEPGG VAPTQTEFVL SNVDSFPSFP FFRSKSNRTE
301: SLHSGPLSGP KDEMLVLKNK APRWHEQLQC WCLNFNGRVT VASVKNFQLV ASAENGVAGQ EHENVILQFG KVGKDVFTMD YQYPISAFQA FAICLSSFDT
401: KIACE
001: MSFKSLIQDM RGELGSISRK GFDVRFGYGR SRSQRVVQDT SVPVDAFKQS CWASMPPELL RDVLMRIEQS EDTWPSRKNV VSCAGVCRNW REIVKEIVRV
101: PELSSKLTFP ISLKQPGPRG SLVQCYIMRN RSNQTYYLYL GLNQAAASND DGKFLLAAKR FRRPTCTDYI ISLNCDDVSR GSNTYIGKLR SNFLGTKFTV
201: YDAQPTNPGT QVTRTRSSRL LSLKQVSPRI PSGNYPVAHI SYELNVLGSR GPRRMQCVMD AIPASAVEPG GTAPTQTELV HSNLDSFPSF SFFRSKSIRA
301: ESLPSGPSSA AQKEGLLVLK NKAPRWHEQL QCWCLNFNGR VTVASVKNFQ LVAAPENGPA GPEHENVILQ FGKVGKDVFT MDYQYPISAF QAFTICLSSF
401: DTKIACE
101: PELSSKLTFP ISLKQPGPRG SLVQCYIMRN RSNQTYYLYL GLNQAAASND DGKFLLAAKR FRRPTCTDYI ISLNCDDVSR GSNTYIGKLR SNFLGTKFTV
201: YDAQPTNPGT QVTRTRSSRL LSLKQVSPRI PSGNYPVAHI SYELNVLGSR GPRRMQCVMD AIPASAVEPG GTAPTQTELV HSNLDSFPSF SFFRSKSIRA
301: ESLPSGPSSA AQKEGLLVLK NKAPRWHEQL QCWCLNFNGR VTVASVKNFQ LVAAPENGPA GPEHENVILQ FGKVGKDVFT MDYQYPISAF QAFTICLSSF
401: DTKIACE
Arabidopsis Description
AtTLP3TLP3 [Source:UniProtKB/TrEMBL;Acc:A0A178VYB2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.