CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0010g01060.t01	Wine grape	mitochondrion	10.5	77.78
VIT_07s0104g01290.t01	Wine grape	cytosol	78.75	77.78
CDY27467	Canola	cytosol	74.25	74.81
AT2G47900.3	Thale cress	cytosol	76.0	74.69
Bra021446.1-P	Field mustard	cytosol	74.75	74.38
CDY55525	Canola	cytosol	74.5	74.13
PGSC0003DMT400029513	Potato	cytosol	72.25	72.98
Solyc09g074510.2.1	Tomato	cytosol	71.5	72.22
KRH21017	Soybean	mitochondrion	52.25	72.07
Os03t0351400-01	Rice	cytosol	52.0	70.27
GSMUA_Achr1P11290_001	Banana	cytosol	71.25	70.2
KRH11270	Soybean	cytosol	66.75	69.35
GSMUA_Achr3P17440_001	Banana	cytosol	69.5	68.98
KXG39376	Sorghum	cytosol, plastid	68.0	68.17
Zm00001d029165_P004	Maize	cytosol, plastid	67.75	67.58
KRH50928	Soybean	cytosol	60.5	67.41
TraesCS4D01G164200.1	Wheat	cytosol, plastid	66.75	66.09
TraesCS4B01G166400.1	Wheat	cytosol, plastid	66.75	66.09
TraesCS4A01G140800.1	Wheat	cytosol, plastid	66.0	65.67
KRH21016	Soybean	cytosol	15.75	63.0
Os07t0667000-01	Rice	cytosol	62.0	61.08
KRH02194	Soybean	cytosol	59.5	60.71
TraesCS2D01G122900.1	Wheat	cytosol	56.0	59.89
TraesCS2B01G141800.1	Wheat	cytosol	56.25	59.52
TraesCS2A01G120900.1	Wheat	mitochondrion	55.75	59.31
EER97690	Sorghum	cytosol	58.25	58.4
KRH76777	Soybean	cytosol	56.25	54.22
KRH35144	Soybean	cytosol, mitochondrion	58.25	54.19
KRH28692	Soybean	cytosol	56.0	54.11
KRG91652	Soybean	cytosol, mitochondrion	57.75	53.72
KRH10476	Soybean	cytosol, mitochondrion	57.0	53.4
KRH08694	Soybean	mitochondrion	56.25	53.07
KRH49321	Soybean	cytosol	24.25	53.01
KRH15179	Soybean	cytosol	56.0	52.96
KRH43964	Soybean	cytosol, mitochondrion	56.5	52.93
KRH70303	Soybean	cytosol	56.0	52.83
KRH08239	Soybean	cytosol	54.5	52.66
KRH69894	Soybean	cytosol	54.25	52.42
Zm00001d007106_P001	Maize	cytosol	40.5	51.92
VIT_01s0010g01050.t01	Wine grape	cytosol	17.5	51.85
KRH21960	Soybean	mitochondrion	47.25	49.61
KRH27356	Soybean	mitochondrion	46.75	49.47
KRH05837	Soybean	mitochondrion	55.5	48.9
VIT_00s0426g00050.t01	Wine grape	extracellular	18.0	45.28
KRH25611	Soybean	cytosol	27.75	37.63
Zm00001d029092_P001	Maize	mitochondrion	20.75	23.99
Zm00001d047019_P001	Maize	mitochondrion	20.75	23.99
KRH23693	Soybean	plastid	19.0	21.35
Zm00001d039784_P001	Maize	mitochondrion, nucleus, peroxisome, plastid	10.25	14.96

Protein Annotations

EntrezGene:100809257	MapMan:15.5.21	Gene3D:3.20.90.10	EMBL:ACUP02000902	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
EnsemblPlantsGene:GLYMA_02G152700	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0005886	GO:GO:0006950
GO:GO:0008150	GO:GO:0008289	GO:GO:0009536	GO:GO:0009605	GO:GO:0009607	GO:GO:0009620
GO:GO:0009628	GO:GO:0009651	GO:GO:0009987	GO:GO:0016020	GO:GO:0035091	GO:GO:0042542
GO:GO:0071470	UniProt:I1JFG1	InterPro:IPR001810	InterPro:IPR025659	EnsemblPlants:KRH71532	ProteinID:KRH71532
ProteinID:KRH71532.1	PFAM:PF00646	PFAM:PF01167	PRINTS:PR01573	ScanProsite:PS01201	PANTHER:PTHR16517
PANTHER:PTHR16517:SF36	SUPFAM:SSF54518	SUPFAM:SSF81383	InterPro:Tubby-like_C	InterPro:Tubby_C	InterPro:Tubby_C_CS
UniParc:UPI0002336E21	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:15665164..15669403

Molecular Weight (calculated)

44765.9 Da

IEP (calculated)

9.756

GRAVY (calculated)

-0.261

Length

400 amino acids

Sequence
(BLAST)

001: MSFRSIILER KGFEVKFGYS MRSRSQSHSD AIAQDSLVVL DGLKQSCWAN MPPELLRDVL MRIEASEDSW PAQKHVVACA GVCRSWREIM KEIVKSPQLS
101: GKLTFPISLK QPGPRDSLLQ CYIKRNRSNQ TYYLFLGLNQ ASTDEGKFLL SARKCRRATH TDYIISLNCD DVSRGSSTYI GKLRSNFLGT KFTVYDAHPP
201: IYGAKVTKSR STRLVSLKQV SPRVPAGNYP IAHVSYDLNV LGSRGPRIMQ CVMDAIPASA VEPGGVAPTQ TQFLHSRIDT SPSIPFFRSK STRMDNLPTV
301: PLTCQNEGTL VLRNKSPRWH EHLQCWCLNF NGRVTVASVK NFQLVASPKN GVSEQAQENV ILQFGKVGKD VFTMDYQYPI SAFQAFAICL SSFDTKIACE

Best Arabidopsis Sequence Match ( AT2G47900.1 )
(BLAST)

001: MSFKSLIQDM RGELGSISRK GFDVRFGYGR SRSQRVVQDT SVPVDAFKQS CWASMPPELL RDVLMRIEQS EDTWPSRKNV VSCAGVCRNW REIVKEIVRV
101: PELSSKLTFP ISLKQPGPRG SLVQCYIMRN RSNQTYYLYL GLNQAASNDD GKFLLAAKRF RRPTCTDYII SLNCDDVSRG SNTYIGKLRS NFLGTKFTVY
201: DAQPTNPGTQ VTRTRSSRLL SLKQVSPRIP SGNYPVAHIS YELNVLGSRG PRRMQCVMDA IPASAVEPGG TAPTQTELVH SNLDSFPSFS FFRSKSIRAE
301: SLPSGPSSAA QKEGLLVLKN KAPRWHEQLQ CWCLNFNGRV TVASVKNFQL VAAPENGPAG PEHENVILQF GKVGKDVFTM DYQYPISAFQ AFTICLSSFD
401: TKIACE

Arabidopsis Description

AtTLP3TLP3 [Source:UniProtKB/TrEMBL;Acc:A0A178VYB2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.