Factsheet for VIT_12s0055g00460.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_18s0001g14860.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G25280.1	VIT_18s0001g14860.t01	AT5G42190.1	12795696
AT1G25280.1	VIT_18s0001g14860.t01	AT5G42190.1	25168737

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH10476	Soybean	cytosol, mitochondrion	88.68	88.06
VIT_18s0072g00630.t01	Wine grape	cytosol	87.74	87.53
KRH43964	Soybean	cytosol, mitochondrion	87.5	86.89
Solyc01g104670.2.1	Tomato	cytosol	85.38	84.78
PGSC0003DMT400076537	Potato	cytosol	85.38	84.78
HORVU5Hr1G023650.1	Barley	plastid	47.88	84.23
Solyc10g046970.1.1	Tomato	mitochondrion	83.73	83.33
PGSC0003DMT400002858	Potato	mitochondrion	83.49	83.1
GSMUA_Achr9P08860_001	Banana	cytosol, mitochondrion	77.83	77.1
CDY36119	Canola	cytosol	74.06	74.41
CDY51990	Canola	cytosol	74.06	74.23
CDX84977	Canola	cytosol	73.11	73.81
Bra010985.1-P	Field mustard	cytosol	76.42	73.8
CDY66464	Canola	cytosol	74.29	73.43
Bra012486.1-P	Field mustard	cytosol	76.42	73.14
CDY72036	Canola	cytosol	76.42	73.14
Bra024763.1-P	Field mustard	cytosol	75.24	72.83
AT1G25280.1	Thale cress	cytosol	76.18	72.58
CDY42119	Canola	cytosol	74.76	72.54
VIT_01s0010g01060.t01	Wine grape	mitochondrion	9.2	72.22
KXG23034	Sorghum	cytosol, mitochondrion	74.29	72.08
TraesCS4D01G110100.1	Wheat	golgi	74.29	71.59
Os12t0163400-01	Rice	cytosol	75.0	71.46
TraesCS4A01G209000.1	Wheat	cytosol, mitochondrion	73.82	71.14
TraesCS4B01G112600.1	Wheat	cytosol, mitochondrion	73.82	71.14
TraesCS5D01G132000.1	Wheat	cytosol, mitochondrion	72.64	70.16
TraesCS5A01G124100.1	Wheat	cytosol	72.41	69.93
TraesCS5B01G123800.1	Wheat	golgi	72.41	69.93
VIT_12s0028g00190.t01	Wine grape	cytosol, extracellular, mitochondrion, plastid	9.67	69.49
Zm00001d053179_P001	Maize	cytosol	72.41	68.53
EES08030	Sorghum	cytosol, mitochondrion	71.46	66.45
VIT_05s0020g01930.t01	Wine grape	cytosol	51.89	62.86
GSMUA_Achr11P...	Banana	cytosol	59.67	60.96
VIT_07s0104g01290.t01	Wine grape	cytosol	56.6	59.26
VIT_04s0023g01950.t01	Wine grape	cytosol	55.66	57.14
VIT_18s0001g12660.t01	Wine grape	cytosol	54.72	55.77
VIT_19s0014g01250.t01	Wine grape	mitochondrion	45.05	47.63
VIT_01s0010g01050.t01	Wine grape	cytosol	13.21	41.48
VIT_00s0426g00050.t01	Wine grape	extracellular	14.39	38.36
VIT_09s0018g01630.t01	Wine grape	cytosol	21.93	24.67

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100247010	wikigene:100247010	MapMan:15.5.21	EMBL:AM467390	ProteinID:CAN68201
ProteinID:CAN68201.1	ProteinID:CCB46138	ProteinID:CCB46138.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	UniProt:F6H1R9
EMBL:FN595228	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0005886	GO:GO:0008150
GO:GO:0008289	GO:GO:0009536	GO:GO:0009605	GO:GO:0009607	GO:GO:0009620	GO:GO:0016020
GO:GO:0035091	InterPro:IPR001810	InterPro:IPR025659	EntrezGene:LOC100247010	wikigene:LOC100247010	PFAM:PF00646
PFAM:PF01167	PRINTS:PR01573	ScanProsite:PS01200	ScanProsite:PS01201	PANTHER:PTHR16517	PANTHER:PTHR16517:SF31
SUPFAM:SSF54518	SUPFAM:SSF81383	TIGR:TC62290	InterPro:Tubby-like_C	InterPro:Tubby_C	InterPro:Tubby_C_CS
UniParc:UPI0001984603	ArrayExpress:VIT_12s0055g00460	EnsemblPlantsGene:VIT_12s0055g00460	EnsemblPlants:VIT_12s0055g00460.t01	unigene:Vvi.14168	RefSeq:XP_002266692
RefSeq:XP_002266692.1	RefSeq:XP_010657561.1	RefSeq:XP_019079287.1	SEG:seg	:	:

Description

Tubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:F6H1R9]

Coordinates

chr12:-:13356579..13361135

Molecular Weight (calculated)

47613.2 Da

IEP (calculated)

9.633

GRAVY (calculated)

-0.342

Length

424 amino acids

Sequence
(BLAST)

001: MSFRSIVRDV RDGFGSLSRR SFDVRLLGHS RGKSIGSFHE MHDQPLVIQN SRWANLPPEL LYDIIKRLEE SESTWPSRKH VVACAAVCRS WRTMCKEIVR
101: SPEFCAKLTF PVSLKQPGPR DGTIQCFIKR DKSNLTYHLF LCLSPALLVE NGKFLLSAKR NRRTTCTEYV ISMDAENISR SSSTYIGKLR SNFLGTKFII
201: YDTQPPHTCA HIPPPGRTSK RFYSKKVSPK VPTGSYNIAH ITYELNVLGT RGPRRMHCTM HSIPASSLDA GGSVPGQPEL LPRALEDSFR SISFSNSLDH
301: SVEFSSSRFS EVCGPCDDEE GKARPLVLKN KAPRWHEQLQ CWCLNFRGRV TVASVKNFQL IAATQPAAGA PTPSQPAPPE HDKIILQFGK VGKDMFTMDY
401: RYPLSAFQAF AICLSSFDTK LACE

Best Arabidopsis Sequence Match ( AT1G25280.1 )
(BLAST)

001: MSFRGIVQDL RDGFGSLSRR SFDFRLSSLH KGKAQGSSFR EYSSSRDLLS PVIVQTSRWA NLPPELLFDV IKRLEESESN WPARKHVVAC ASVCRSWRAM
101: CQEIVLGPEI CGKLTFPVSL KQPGPRDAMI QCFIKRDKSK LTFHLFLCLS PALLVENGKF LLSAKRTRRT TRTEYIISMD ADNISRSSNS YLGKLRSNFL
201: GTKFLVYDTQ PPPNTSSSAL ITDRTSRSRF HSRRVSPKVP SGSYNIAQIT YELNVLGTRG PRRMHCIMNS IPISSLEPGG SVPNQPEKLV PAPYSLDDSF
301: RSNISFSKSS FDHRSLDFSS SRFSEMGISC DDNEEEASFR PLILKNKQPR WHEQLQCWCL NFRGRVTVAS VKNFQLVAAR QPQPQGTGAA AAPTSAPAHP
401: EQDKVILQFG KVGKDMFTMD YRYPLSAFQA FAICLSSFDT KLACE

Arabidopsis Description

TULP10Tubby-like F-box protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9FRH7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.