Factsheet for HORVU5Hr1G023650.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
MultiLoc:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0072g00630.t01	Wine grape	cytosol	91.29	51.76
KRH70303	Soybean	cytosol	87.14	49.53
KRH08694	Soybean	mitochondrion	86.72	49.29
VIT_12s0055g00460.t01	Wine grape	mitochondrion	84.23	47.88
KRH10476	Soybean	cytosol, mitochondrion	84.23	47.54
KRH35144	Soybean	cytosol, mitochondrion	84.23	47.21
PGSC0003DMT400061933	Potato	cytosol	83.4	47.18
Solyc04g071440.2.1	Tomato	mitochondrion	82.99	46.95
KRG91652	Soybean	cytosol, mitochondrion	83.4	46.74
KRH43964	Soybean	cytosol, mitochondrion	82.57	46.6
Solyc01g104670.2.1	Tomato	cytosol	81.33	45.9
PGSC0003DMT400076537	Potato	cytosol	81.33	45.9
Solyc10g046970.1.1	Tomato	mitochondrion	79.25	44.84
PGSC0003DMT400002858	Potato	mitochondrion	79.25	44.84
HORVU1Hr1G074940.3	Barley	cytosol, mitochondrion, nucleus, plastid	80.08	42.7
HORVU3Hr1G083290.1	Barley	mitochondrion	77.59	41.65
Bra040803.1-P	Field mustard	cytosol	76.76	41.39
CDY13570	Canola	cytosol	72.61	41.18
CDY45959	Canola	cytosol	72.61	40.79
HORVU4Hr1G020110.3	Barley	cytosol, mitochondrion	73.03	40.0
CDX84977	Canola	cytosol	69.29	39.76
CDY42119	Canola	cytosol	71.78	39.59
Bra024763.1-P	Field mustard	cytosol	71.78	39.5
HORVU5Hr1G040000.2	Barley	cytosol	71.78	39.41
AT1G76900.1	Thale cress	cytosol	74.27	39.34
AT1G25280.1	Thale cress	cytosol	72.61	39.33
CDY72036	Canola	cytosol	72.2	39.28
Bra012486.1-P	Field mustard	cytosol	72.2	39.28
Bra010985.1-P	Field mustard	cytosol	71.37	39.18
AT1G43640.1	Thale cress	cytosol	69.29	38.93
CDY66464	Canola	cytosol	68.88	38.69
CDY65845	Canola	cytosol, mitochondrion	72.2	38.67
CDY36119	Canola	cytosol	67.63	38.63
Bra015711.1-P	Field mustard	cytosol, mitochondrion	74.27	38.49
CDX87562	Canola	cytosol, mitochondrion	71.78	38.36
CDY51990	Canola	cytosol	67.22	38.3
HORVU6Hr1G068970.3	Barley	cytosol	58.09	32.79
HORVU3Hr1G061930.1	Barley	cytosol	44.4	30.06
HORVU0Hr1G001350.2	Barley	cytosol	45.23	29.22
HORVU2Hr1G124880.1	Barley	plastid	73.44	28.5
HORVU1Hr1G076900.1	Barley	cytosol	45.23	28.31
HORVU6Hr1G029710.3	Barley	plastid	23.65	14.43

Protein Annotations

EnsemblPlants:HORVU5Hr1G023650.1	EnsemblPlantsGene:HORVU5Hr1G023650	InterPro:IPR025659	InterPro:Tubby-like_C	InterPro:Tubby_C	InterPro:Tubby_C_CS
PANTHER:PTHR16517	PANTHER:PTHR16517:SF45	PFAM:PF01167	PRINTS:PR01573	ScanProsite:PS01200	ScanProsite:PS01201
SEG:seg	SUPFAM:SSF54518	UniParc:UPI000B466AAE	UniProt:A0A287QN38	MapMan:15.5.21	:

Description

Tubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:A0A287QN38]

Coordinates

chrchr5H:+:124760775..124761781

Molecular Weight (calculated)

26823.1 Da

IEP (calculated)

9.655

GRAVY (calculated)

-0.401

Length

241 amino acids

Sequence
(BLAST)

001: MHTVLGFRSN FLGTKFIIYD TQPPYNNGQL SPPGRSRRFH SKKVSPKVPT GSYNIAQVIY ELNVLGTRGP RRMQCTMHSI PAAALEPGGA VPGQPELLPR
101: SLEDSFRSIS FSKSIDNSTE FSSSRFSDII GPRDEDEGKE RPLVLRNKAP RWHEQLQCWC LNFRGRVTVA SVKNFQLIAA TQPAAGAPTP SQPAPPDHDK
201: IILQFGKVGK DMFTMDYRYP LSAFQAFAIC LSSFDTKLAC E

Best Arabidopsis Sequence Match ( AT1G25280.1 )
(BLAST)

001: MSFRGIVQDL RDGFGSLSRR SFDFRLSSLH KGKAQGSSFR EYSSSRDLLS PVIVQTSRWA NLPPELLFDV IKRLEESESN WPARKHVVAC ASVCRSWRAM
101: CQEIVLGPEI CGKLTFPVSL KQPGPRDAMI QCFIKRDKSK LTFHLFLCLS PALLVENGKF LLSAKRTRRT TRTEYIISMD ADNISRSSNS YLGKLRSNFL
201: GTKFLVYDTQ PPPNTSSSAL ITDRTSRSRF HSRRVSPKVP SGSYNIAQIT YELNVLGTRG PRRMHCIMNS IPISSLEPGG SVPNQPEKLV PAPYSLDDSF
301: RSNISFSKSS FDHRSLDFSS SRFSEMGISC DDNEEEASFR PLILKNKQPR WHEQLQCWCL NFRGRVTVAS VKNFQLVAAR QPQPQGTGAA AAPTSAPAHP
401: EQDKVILQFG KVGKDMFTMD YRYPLSAFQA FAICLSSFDT KLACE

Arabidopsis Description

TULP10Tubby-like F-box protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9FRH7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.