Factsheet for HORVU2Hr1G124880.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G584900.1	Wheat	cytosol, mitochondrion	73.75	97.65
TraesCS2A01G574000.1	Wheat	golgi	73.75	97.24
TraesCS2B01G613800.1	Wheat	mitochondrion, nucleus	73.59	96.82
Os04t0687900-01	Rice	cytosol	59.42	79.87
Zm00001d002896_P001	Maize	cytosol	54.59	77.05
OQU82627	Sorghum	cytosol	55.72	76.38
HORVU5Hr1G023650.1	Barley	plastid	28.5	73.44
HORVU1Hr1G074940.3	Barley	cytosol, mitochondrion, nucleus, plastid	48.15	66.15
HORVU3Hr1G083290.1	Barley	mitochondrion	46.22	63.92
HORVU4Hr1G020110.3	Barley	cytosol, mitochondrion	44.44	62.73
HORVU5Hr1G040000.2	Barley	cytosol	44.28	62.64
HORVU3Hr1G061930.1	Barley	cytosol	29.47	51.4
HORVU6Hr1G068970.3	Barley	cytosol	34.46	50.12
HORVU1Hr1G076900.1	Barley	cytosol	28.5	45.97
HORVU0Hr1G001350.2	Barley	cytosol	17.07	28.42
HORVU6Hr1G029710.3	Barley	plastid	12.56	19.75

Protein Annotations

Gene3D:1.20.1280.50	MapMan:15.5.21	Gene3D:3.20.90.10	UniProt:A0A287JSS9	ncoils:Coil	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0009605
GO:GO:0009607	GO:GO:0009620	EnsemblPlantsGene:HORVU2Hr1G124880	EnsemblPlants:HORVU2Hr1G124880.1	InterPro:IPR001810	InterPro:IPR025659
PFAM:PF00646	PFAM:PF01167	PRINTS:PR01573	ScanProsite:PS01200	ScanProsite:PS01201	PANTHER:PTHR16517
PANTHER:PTHR16517:SF38	SUPFAM:SSF54518	SUPFAM:SSF81383	InterPro:Tubby-like_C	InterPro:Tubby_C	InterPro:Tubby_C_CS
UniParc:UPI000B47C5BB	SEG:seg	:	:	:	:

Description

Tubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:A0A287JSS9]

Coordinates

chrchr2H:-:759409384..759413620

Molecular Weight (calculated)

68222.0 Da

IEP (calculated)

9.179

GRAVY (calculated)

-0.391

Length

621 amino acids

Sequence
(BLAST)

001: ALSTHPPTPR TVSLNPIHGS PPPLPRLRSP LPFLHSQPPL NSRSALPLRL LGSDFTDVGP RRSRRIFSEV GAEIRSCKSE HCAILSFGDL VLLDNSAAEP
101: SFSFLPCWDI GRPICALLCP PVVALLLLSP AAVSYSSRFA PSPKMTLRSI VRDFRESFGN LSRRNFEAKI SSVPSLSGHY RGKSLESASE LQDSLVTDLQ
201: GNWASLPPEL LRDVMKRLEE DDSNWPSRKD VVACASVCTT WREMCKDIVR NPEFCGKLTF PVSLKQPGSR DGLIQCFIKR DKSKLTYRLY LSLTSAVLDD
301: NGKFLLSAKR SRRTTYTDYA ISMDPKNISR SSSGYIGKLR SNFLGTKFII YDTQPPYNAG KLCPQERTSR RFSSRKVSPK VPAATGSYPI AQVNYELNVL
401: GTRGPRRMQC TMNSIPTSAV DPDGVVPGQP KELLPRLFEE SFRTTASSRY STADHSTDFG SCRFSEFGGG PLREDGGDDN AEDKESPLVL KNKSPRWHEQ
501: LQCWCLNFRG RVTVASVKNF QLIAAPAPPP PASGGEAAPE PPSQLQPPQQ QPTSAAAQPQ PAGSSLSASS SSSSSSHHDT VLLQFGKVSK DTFTMDYRYP
601: LSAFQAFAIC LTSFDTKLAC E

Best Arabidopsis Sequence Match ( AT1G25280.1 )
(BLAST)

001: MSFRGIVQDL RDGFGSLSRR SFDFRLSSLH KGKAQGSSFR EYSSSRDLLS PVIVQTSRWA NLPPELLFDV IKRLEESESN WPARKHVVAC ASVCRSWRAM
101: CQEIVLGPEI CGKLTFPVSL KQPGPRDAMI QCFIKRDKSK LTFHLFLCLS PALLVENGKF LLSAKRTRRT TRTEYIISMD ADNISRSSNS YLGKLRSNFL
201: GTKFLVYDTQ PPPNTSSSAL ITDRTSRSRF HSRRVSPKVP SGSYNIAQIT YELNVLGTRG PRRMHCIMNS IPISSLEPGG SVPNQPEKLV PAPYSLDDSF
301: RSNISFSKSS FDHRSLDFSS SRFSEMGISC DDNEEEASFR PLILKNKQPR WHEQLQCWCL NFRGRVTVAS VKNFQLVAAR QPQPQGTGAA AAPTSAPAHP
401: EQDKVILQFG KVGKDMFTMD YRYPLSAFQA FAICLSSFDT KLACE

Arabidopsis Description

TULP10Tubby-like F-box protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9FRH7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.