Factsheet for Zm00001d053179_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES08030	Sorghum	cytosol, mitochondrion	90.18	88.6
HORVU4Hr1G020110.3	Barley	cytosol, mitochondrion	76.79	78.18
TraesCS4D01G110100.1	Wheat	golgi	76.56	77.95
TraesCS4B01G112600.1	Wheat	cytosol, mitochondrion	76.12	77.5
TraesCS4A01G209000.1	Wheat	cytosol, mitochondrion	76.12	77.5
GSMUA_Achr9P08860_001	Banana	cytosol, mitochondrion	70.76	74.07
VIT_18s0072g00630.t01	Wine grape	cytosol	70.09	73.88
PGSC0003DMT400061933	Potato	cytosol	68.97	72.54
VIT_12s0055g00460.t01	Wine grape	mitochondrion	68.53	72.41
Solyc04g071440.2.1	Tomato	mitochondrion	68.53	72.07
KRH08694	Soybean	mitochondrion	67.19	70.99
KRH10476	Soybean	cytosol, mitochondrion	67.63	70.96
KRH70303	Soybean	cytosol	66.74	70.52
KRH43964	Soybean	cytosol, mitochondrion	66.52	69.79
Solyc01g104670.2.1	Tomato	cytosol	65.4	68.62
PGSC0003DMT400076537	Potato	cytosol	65.4	68.62
KRG91652	Soybean	cytosol, mitochondrion	65.85	68.6
Solyc10g046970.1.1	Tomato	mitochondrion	65.18	68.54
KRH35144	Soybean	cytosol, mitochondrion	65.62	68.37
PGSC0003DMT400002858	Potato	mitochondrion	64.96	68.31
CDY13570	Canola	cytosol	61.61	64.94
CDY45959	Canola	cytosol	62.05	64.8
CDX84977	Canola	cytosol	60.27	64.29
Bra040803.1-P	Field mustard	cytosol	63.84	63.98
Bra024763.1-P	Field mustard	cytosol	62.28	63.7
CDY42119	Canola	cytosol	61.83	63.39
CDY36119	Canola	cytosol	59.38	63.03
AT1G76900.1	Thale cress	cytosol	63.39	62.42
CDY66464	Canola	cytosol	59.6	62.24
CDY51990	Canola	cytosol	58.71	62.17
Bra010985.1-P	Field mustard	cytosol	60.71	61.96
Bra012486.1-P	Field mustard	cytosol	61.16	61.85
CDY72036	Canola	cytosol	61.16	61.85
AT1G25280.1	Thale cress	cytosol	61.38	61.8
CDY65845	Canola	cytosol, mitochondrion	61.61	61.33
Zm00001d042724_P002	Maize	mitochondrion	65.62	61.25
AT1G43640.1	Thale cress	cytosol	58.26	60.84
CDX87562	Canola	cytosol, mitochondrion	61.16	60.75
Zm00001d038310_P003	Maize	mitochondrion	66.74	60.04
Zm00001d002896_P001	Maize	cytosol	58.93	60.0
Bra015711.1-P	Field mustard	cytosol, mitochondrion	61.83	59.57
Zm00001d052765_P002	Maize	mitochondrion	59.38	58.33
GSMUA_Achr11P...	Banana	cytosol	54.02	58.31
Zm00001d029165_P004	Maize	cytosol, plastid	49.33	55.11
Zm00001d011578_P003	Maize	nucleus	41.74	52.23
Zm00001d051568_P001	Maize	cytosol	50.0	51.38
Zm00001d017773_P001	Maize	cytosol	49.78	51.03
Zm00001d043895_P003	Maize	cytosol	40.85	48.41
Zm00001d038691_P001	Maize	mitochondrion	38.84	47.41
Zm00001d007106_P001	Maize	cytosol	31.03	44.55
Zm00001d033948_P004	Maize	cytosol	12.28	30.39
Zm00001d029092_P001	Maize	mitochondrion	16.29	21.1
Zm00001d047019_P001	Maize	mitochondrion	16.29	21.1
Zm00001d015485_P001	Maize	plastid	17.86	19.9
Zm00001d039784_P001	Maize	mitochondrion, nucleus, peroxisome, plastid	10.49	17.15

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100193930	MapMan:15.5.21	ProteinID:AQK58885.1	ProteinID:AQK58887.1	UniProt:B4F9I7
EMBL:BT033775	EMBL:BT054139	EMBL:BT064521	EMBL:BT086398	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR025659	EMBL:KJ727961
PFAM:PF00646	PFAM:PF01167	PRINTS:PR01573	ScanProsite:PS01200	ScanProsite:PS01201	PANTHER:PTHR16517
PANTHER:PTHR16517:SF43	SUPFAM:SSF54518	SUPFAM:SSF81383	InterPro:Tubby-like_C	InterPro:Tubby_C	InterPro:Tubby_C_CS
UniParc:UPI00017B6155	EnsemblPlantsGene:Zm00001d053179	EnsemblPlants:Zm00001d053179_P001	EnsemblPlants:Zm00001d053179_T001	SEG:seg	:

Description

TUB-transcription factor 3Tubby-like F-box protein 10

Coordinates

chr4:+:218421396..218425679

Molecular Weight (calculated)

49554.1 Da

IEP (calculated)

8.921

GRAVY (calculated)

-0.293

Length

448 amino acids

Sequence
(BLAST)

001: MPFRSIVRDV RDGFGSLSRR GFEVRFLSHR RGKSHGAVHE LHDPVLVVQS SCWASLPPEL LRDVIERLET SEDTWPSRKH VVACAAVCRT WREMCREIVK
101: SPEFSGKITF PVSLKQPGPR DGTIQCFIKR DTSTQIYSLY LSFSSAVPVE NGKFLLSAKR NCRATYTEYI ISINSGDTSR CTSNNTYIGK LRSNFLGTKF
201: VIYDTHPPYN GTSQTVAGKT SQRFYSKKGS TKVSCRWYSI AQISYELNVL GTRGPRRMNC VMHSIPASCL EAGGSVPCQP DSIAAHSVGG SFSSVSLSKS
301: STMDHSMHFT SSRLSDAITG DGIVNRGQAL NDADDEECKD MPLILRNKAP RWHEQLQCWC LNFRGRVTVA SVKNFQLVAA TQPAAGALTP SQAAPQPAPP
401: PPPDQEKVIL QFGKVGKDIF TMDYCYPLSA FQAFAICLSS FDTKLACE

Best Arabidopsis Sequence Match ( AT1G25280.1 )
(BLAST)

001: MSFRGIVQDL RDGFGSLSRR SFDFRLSSLH KGKAQGSSFR EYSSSRDLLS PVIVQTSRWA NLPPELLFDV IKRLEESESN WPARKHVVAC ASVCRSWRAM
101: CQEIVLGPEI CGKLTFPVSL KQPGPRDAMI QCFIKRDKSK LTFHLFLCLS PALLVENGKF LLSAKRTRRT TRTEYIISMD ADNISRSSNS YLGKLRSNFL
201: GTKFLVYDTQ PPPNTSSSAL ITDRTSRSRF HSRRVSPKVP SGSYNIAQIT YELNVLGTRG PRRMHCIMNS IPISSLEPGG SVPNQPEKLV PAPYSLDDSF
301: RSNISFSKSS FDHRSLDFSS SRFSEMGISC DDNEEEASFR PLILKNKQPR WHEQLQCWCL NFRGRVTVAS VKNFQLVAAR QPQPQGTGAA AAPTSAPAHP
401: EQDKVILQFG KVGKDMFTMD YRYPLSAFQA FAICLSSFDT KLACE

Arabidopsis Description

TULP10Tubby-like F-box protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9FRH7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.