Factsheet for PGSC0003DMT400027634

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g067680.2.1	Tomato	cytosol	59.02	91.97
KRH21017	Soybean	mitochondrion	56.44	75.52
VIT_05s0020g01930.t01	Wine grape	cytosol	66.49	73.71
KRH11270	Soybean	cytosol	70.1	70.65
KRH50928	Soybean	cytosol	62.89	67.97
PGSC0003DMT400029513	Potato	cytosol	66.75	65.4
KRH02194	Soybean	cytosol	62.63	61.99
KRH21016	Soybean	cytosol	14.69	57.0
PGSC0003DMT400002858	Potato	mitochondrion	55.93	50.94
PGSC0003DMT400061933	Potato	cytosol	55.67	50.7
PGSC0003DMT400076537	Potato	cytosol	55.67	50.59
PGSC0003DMT400040088	Potato	cytosol	52.84	50.0
PGSC0003DMT400009280	Potato	cytosol	52.06	49.63
PGSC0003DMT400058090	Potato	cytosol	51.29	49.01
PGSC0003DMT400018209	Potato	mitochondrion	48.71	48.96
PGSC0003DMT400016310	Potato	cytosol	50.26	48.63
AT1G61940.2	Thale cress	cytosol	26.03	38.11
PGSC0003DMT400036862	Potato	nucleus	20.1	18.75

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:102589959	MapMan:15.5.21	Gene3D:3.20.90.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR025659	UniProt:M1APZ0
PFAM:PF00646	PFAM:PF01167	EnsemblPlantsGene:PGSC0003DMG400010655	PGSC:PGSC0003DMG400010655	EnsemblPlants:PGSC0003DMT400027634	PRINTS:PR01573
ScanProsite:PS01200	ScanProsite:PS01201	PANTHER:PTHR16517	PANTHER:PTHR16517:SF36	SUPFAM:SSF54518	SUPFAM:SSF81383
InterPro:Tubby-like_C	InterPro:Tubby_C	InterPro:Tubby_C_CS	UniParc:UPI000294C551	RefSeq:XP_006342737.1	SEG:seg

Description

Phosphoric diester hydrolase [Source:PGSC_GENE;Acc:PGSC0003DMG400010655]

Coordinates

chr1:-:59369741..59373248

Molecular Weight (calculated)

43055.1 Da

IEP (calculated)

9.565

GRAVY (calculated)

-0.278

Length

388 amino acids

Sequence
(BLAST)

001: MKWGYGSKSR CRQSSVVAVA EETEGIDEGL VESCWANLPL ELLREVLMRI EDTESKWPLR KSVVACSGVC RSWRDIMKEL VKTPEVSGKL TFPISVKQPG
101: PRDTLLQCFI KRNQTTQTYH LYLSLTQALA DDGKFLLAAR KYRKATCTDY TISLDANEMS KGGGTCIGKL RSNFLGTKFT AYDSILPYAG AKLVKSRSTR
201: LVGSKQMNPR VPAGNYEVAH ISYELNVLGA SRGPRRMHCV MDAIPASAIK PGGIAPTQVD FPMDNSGSSL PMRFLRSKSS RLEKSLSGPI ETQREGSLVL
301: KNKAPRWHEQ LQCWCLNFHG RVTVASVKNF QLVASPENGA AGPEHEKVIL QFGKVGKDMF TMDYRYPLSA FQAFAICLSS FDTKIACE

Best Arabidopsis Sequence Match ( AT2G47900.3 )
(BLAST)

001: MSFKSLIQDM RGELGSISRK GFDVRFGYGR SRSQRVVQDT SVPVDAFKQS CWASMPPELL RDVLMRIEQS EDTWPSRKNV VSCAGVCRNW REIVKEIVRV
101: PELSSKLTFP ISLKQPGPRG SLVQCYIMRN RSNQTYYLYL GLNQAAASND DGKFLLAAKR FRRPTCTDYI ISLNCDDVSR GSNTYIGKLR SNFLGTKFTV
201: YDAQPTNPGT QVTRTRSSRL LSLKQVSPRI PSGNYPVAHI SYELNVLGSR GPRRMQCVMD AIPASAVEPG GTAPTQTELV HSNLDSFPSF SFFRSKSIRA
301: ESLPSGPSSA AQKEGLLVLK NKAPRWHEQL QCWCLNFNGR VTVASVKNFQ LVAAPENGPA GPEHENVILQ FGKVGKDVFT MDYQYPISAF QAFTICLSSF
401: DTKIACE

Arabidopsis Description

AtTLP3TLP3 [Source:UniProtKB/TrEMBL;Acc:A0A178VYB2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.