Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- endoplasmic reticulum 2
- plasma membrane 4
- vacuole 2
- extracellular 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra020754.1-P | |
| Bra026081.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G04620.1 | Bra026081.1-P | AT1G16070.1 | 16792696 |
| AT2G04620.1 | Bra020754.1-P | AT3G06380.1 | 16792696 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY30837 | Canola | plasma membrane, plastid | 97.52 | 97.01 |
| AT2G04620.1 | Thale cress | plasma membrane | 75.69 | 72.56 |
| KRH42631 | Soybean | endoplasmic reticulum, nucleus, plasma membrane, plastid | 55.69 | 54.13 |
| PGSC0003DMT400017877 | Potato | plasma membrane | 60.26 | 51.62 |
| Solyc02g067620.1.1 | Tomato | nucleus | 59.87 | 50.78 |
| Os08t0422200-00 | Rice | cytosol | 13.73 | 46.67 |
| HORVU2Hr1G025050.1 | Barley | endoplasmic reticulum, plasma membrane | 26.54 | 43.01 |
| TraesCS2A01G141400.1 | Wheat | plastid | 42.88 | 42.0 |
| TraesCS2B01G166400.1 | Wheat | plastid | 43.14 | 41.35 |
| TraesCS2D01G144900.1 | Wheat | plastid | 42.22 | 41.25 |
| EES15000 | Sorghum | plastid | 42.22 | 40.53 |
| Zm00001d032262_P001 | Maize | plasma membrane, plastid | 41.44 | 40.13 |
| Zm00001d050335_P001 | Maize | plastid | 40.91 | 39.77 |
| VIT_14s0066g02030.t01 | Wine grape | endoplasmic reticulum, golgi, nucleus | 49.28 | 34.21 |
| Bra039979.1-P | Field mustard | cytosol, golgi, plasma membrane | 10.85 | 23.38 |
| Bra004506.1-P | Field mustard | golgi, peroxisome, plasma membrane | 10.72 | 21.75 |
| Bra000432.1-P | Field mustard | golgi, peroxisome, plasma membrane | 10.59 | 21.04 |
| Bra007643.1-P | Field mustard | cytosol | 2.61 | 19.61 |
| Bra018390.1-P | Field mustard | cytosol, golgi, plasma membrane | 1.96 | 13.27 |
Protein Annotations
| Gene3D:1.20.1510.10 | MapMan:24.2.9.2.3 | EnsemblPlantsGene:Bra025618 | EnsemblPlants:Bra025618.1 | EnsemblPlants:Bra025618.1-P | InterPro:Cation_efflux |
| InterPro:Cation_efflux_TMD_sf | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006812 |
| GO:GO:0008150 | GO:GO:0008324 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0055085 | GO:GO:0098655 |
| InterPro:IPR027469 | UniProt:M4EA11 | PFAM:PF01545 | PANTHER:PTHR11562 | PANTHER:PTHR11562:SF13 | SUPFAM:SSF161111 |
| TIGRFAMs:TIGR01297 | TMHMM:TMhelix | UniParc:UPI0002544B57 | SEG:seg | : | : |
Description
AT2G04620 (E=3e-223) | cation efflux family protein
Coordinates
chrA04:-:7467024..7469321
Molecular Weight (calculated)
86229.6 Da
IEP (calculated)
7.241
GRAVY (calculated)
0.019
Length
765 amino acids
Sequence
(BLAST)
(BLAST)
001: MADHHHNHHQ QHRPNRLSLP ARSIGRAYPS FPYTPTPTPS KTRTRSIHGT TRSSISFLLL ILFSLRSLYS LLPFLRSSPS FSLFPFTFLV SLLSFLFSLA
101: FTLFSPSKKD SFLRHNRTAF SITLSQTKLI LAKSVFLAVV FLLRFQALRY CSAAAMILAE LSGTVSARVL SGDHGSSKVR GFCILFAGLL LLSISWDRVD
201: CFPFSSSSLQ NCLRIWPMLL PFLSGFLGCY EKVSMNWVEI KQLDQKRVRL ITLFLTTVLL FPLALWSFVE SDEAGVSFGN LGWPLANTVV FGVLLSESYN
301: DDKLKKDSER EFLVTFLCTI VLELFYFPEL SLWGLLLCGF LLYVAVRELD SSDYQEIGME SPESFSAVFM KPIRHILSEK KSRKIALFLL INTAYMVVEF
401: VAGFMSNSLG LISDACHMLF DCAALAIGLY ASYISRLPAN HQFNYGRGRF EVLSGYVNAV FLVLVGALIV LESIERILDP QEISTSSLLV VSIGGLLVNV
501: VGLIFFHEEH HHAHGGGSGC THSHSHQSHK HEEHHDHDDH QHHSHSHKHE EHHDHHQHHS HNHKNEESHD HNHDHHHHSH SHTHEEHHED NHSHGNDHGH
601: HHHSDHKPAK GEIKEHHHID HNMEGIFLHV LADTMGSVGV VVSTLLIKYK GWLVADPASS IFISILIIAS VIPLLRNSAG ILLQRVPKAH EHDLREAMRN
701: ILKTKGVCSI QRLHVWSFTN SDVVATLHLL VSGDSDKTDT KLQVSHLLED AGVKDLTLQV EFVNS
101: FTLFSPSKKD SFLRHNRTAF SITLSQTKLI LAKSVFLAVV FLLRFQALRY CSAAAMILAE LSGTVSARVL SGDHGSSKVR GFCILFAGLL LLSISWDRVD
201: CFPFSSSSLQ NCLRIWPMLL PFLSGFLGCY EKVSMNWVEI KQLDQKRVRL ITLFLTTVLL FPLALWSFVE SDEAGVSFGN LGWPLANTVV FGVLLSESYN
301: DDKLKKDSER EFLVTFLCTI VLELFYFPEL SLWGLLLCGF LLYVAVRELD SSDYQEIGME SPESFSAVFM KPIRHILSEK KSRKIALFLL INTAYMVVEF
401: VAGFMSNSLG LISDACHMLF DCAALAIGLY ASYISRLPAN HQFNYGRGRF EVLSGYVNAV FLVLVGALIV LESIERILDP QEISTSSLLV VSIGGLLVNV
501: VGLIFFHEEH HHAHGGGSGC THSHSHQSHK HEEHHDHDDH QHHSHSHKHE EHHDHHQHHS HNHKNEESHD HNHDHHHHSH SHTHEEHHED NHSHGNDHGH
601: HHHSDHKPAK GEIKEHHHID HNMEGIFLHV LADTMGSVGV VVSTLLIKYK GWLVADPASS IFISILIIAS VIPLLRNSAG ILLQRVPKAH EHDLREAMRN
701: ILKTKGVCSI QRLHVWSFTN SDVVATLHLL VSGDSDKTDT KLQVSHLLED AGVKDLTLQV EFVNS
001: MVDHHHHHHH QHRPNRLSVP QPTIGRTYPS FPYTPTPTPS KTRLSSSSSY RSIHGSKSSL SFLFLILFSL RSLYSLLPFL RSSPSFSLFP FSFLVSLLSF
101: LFSLSFTIIS SFSPSKKDPF LLRLQNRSFS SISSLSSSQI KLLLAKSFLL AFVFLLRFQA LRYCGAAAMI LAELSGTVSA RVLFSDTGGI GVRSSKVRGF
201: CVLFAGLLLL SISWDRVDCF PFSSSVESWG FWIYPKENCL RIWPLLLPFL SGFLGCYEKV SVNWNEIKQL DQKRVRLLSL FLTTVLLFPL AIWSFFFSGS
301: GDDSVSFGNL GWPLANTVVF GVLLSENYND DKFSSSKKKD SEREFLVTFL CTIVLELFYF PELSLWGLLL CGLLLYIAVR ELESVYSDYQ EIGMESPESF
401: STMFMKPIRH ILSEKKSRKI ALFLLINTAY MVVEFVAGFM SNSLGLISDA CHMLFDCAAL AIGLYASYIS RLPANHQYNY GRGRFEVLSG YVNAVFLVLV
501: GALIVLESIE RILDPQEIST NSLLVVSVGG LLVNIVGLIF FHEEHHHAHG GSGCTHSHSH QSHSHKNEEH HQHSDSHKHE EHHQHSDSHK HEEHHEHDHH
601: HHSHSHKHEE CNHNHDHEHQ SHSHNHEECN HNHDHHSDHQ PEKSEKKEHR HIDHNMEGIF LHVLADTMGS VGVVISTLLI KYKGWLVADP ASSIFISILI
701: IASVIPLLRN SAEILLQRVP RAHRQDLKEA MRNILKTKGV CSIQRLHVWS FTNSDVVATL HLLVSADSDK TDTKLQVSRL LEDAGVKDWT LQVESVNS
101: LFSLSFTIIS SFSPSKKDPF LLRLQNRSFS SISSLSSSQI KLLLAKSFLL AFVFLLRFQA LRYCGAAAMI LAELSGTVSA RVLFSDTGGI GVRSSKVRGF
201: CVLFAGLLLL SISWDRVDCF PFSSSVESWG FWIYPKENCL RIWPLLLPFL SGFLGCYEKV SVNWNEIKQL DQKRVRLLSL FLTTVLLFPL AIWSFFFSGS
301: GDDSVSFGNL GWPLANTVVF GVLLSENYND DKFSSSKKKD SEREFLVTFL CTIVLELFYF PELSLWGLLL CGLLLYIAVR ELESVYSDYQ EIGMESPESF
401: STMFMKPIRH ILSEKKSRKI ALFLLINTAY MVVEFVAGFM SNSLGLISDA CHMLFDCAAL AIGLYASYIS RLPANHQYNY GRGRFEVLSG YVNAVFLVLV
501: GALIVLESIE RILDPQEIST NSLLVVSVGG LLVNIVGLIF FHEEHHHAHG GSGCTHSHSH QSHSHKNEEH HQHSDSHKHE EHHQHSDSHK HEEHHEHDHH
601: HHSHSHKHEE CNHNHDHEHQ SHSHNHEECN HNHDHHSDHQ PEKSEKKEHR HIDHNMEGIF LHVLADTMGS VGVVISTLLI KYKGWLVADP ASSIFISILI
701: IASVIPLLRN SAEILLQRVP RAHRQDLKEA MRNILKTKGV CSIQRLHVWS FTNSDVVATL HLLVSADSDK TDTKLQVSRL LEDAGVKDWT LQVESVNS
Arabidopsis Description
Metal tolerance protein 12 [Source:UniProtKB/TrEMBL;Acc:A0A0A8IL98]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.