Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY22051 | Canola | cytosol | 80.36 | 81.33 |
| CDY50384 | Canola | cytosol | 78.87 | 79.82 |
| Bra036266.1-P | Field mustard | cytosol | 81.55 | 66.99 |
| Solyc09g075080.2.1 | Tomato | cytosol | 59.52 | 61.54 |
| PGSC0003DMT400029665 | Potato | cytosol, endoplasmic reticulum, nucleus | 60.42 | 61.14 |
| KRH68185 | Soybean | nucleus | 54.17 | 55.66 |
| VIT_07s0005g00340.t01 | Wine grape | cytosol | 62.8 | 55.24 |
| GSMUA_Achr11P... | Banana | cytosol | 54.17 | 53.06 |
| GSMUA_Achr8P10140_001 | Banana | plastid | 52.98 | 43.1 |
| Os05t0365000-00 | Rice | cytosol | 44.94 | 42.78 |
| HORVU1Hr1G058630.1 | Barley | cytosol | 44.35 | 41.39 |
| TraesCS1D01G232200.1 | Wheat | cytosol | 44.94 | 41.26 |
| TraesCS1B01G244300.1 | Wheat | cytosol | 45.54 | 41.24 |
| TraesCS1A01G229800.1 | Wheat | cytosol | 45.24 | 41.08 |
| Zm00001d009918_P001 | Maize | cytosol | 44.05 | 39.57 |
| EES18088 | Sorghum | cytosol | 44.94 | 39.22 |
Protein Annotations
| MapMan:19.2.2.8.1.4.6 | MapMan:26.1.1.3.4 | EntrezGene:828008 | ProteinID:AAC19270.1 | ProteinID:AEE82172.1 | EMBL:AK229833 |
| ArrayExpress:AT4G02440 | EnsemblPlantsGene:AT4G02440 | RefSeq:AT4G02440 | TAIR:AT4G02440 | RefSeq:AT4G02440-TAIR-G | EnsemblPlants:AT4G02440.1 |
| TAIR:AT4G02440.1 | EMBL:AY085530 | EMBL:BT002038 | EMBL:BT008731 | ProteinID:CAB80737.1 | Symbol:EID1 |
| InterPro:F-box-like_dom_sf | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009585 |
| GO:GO:0009605 | GO:GO:0009628 | GO:GO:0009791 | GO:GO:0009987 | GO:GO:0010017 | GO:GO:0010099 |
| GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0048366 | GO:GO:0048573 | RefSeq:NP_192153.1 |
| PO:PO:0000003 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PANTHER:PTHR31348 | PANTHER:PTHR31348:SF4 | UniProt:Q8LEA8 | SUPFAM:SSF81383 | UniParc:UPI00000ABF50 |
| SEG:seg | : | : | : | : | : |
Description
EID1Phytochrome A-associated F-box protein [Source:UniProtKB/Swiss-Prot;Acc:Q8LEA8]
Coordinates
chr4:+:1072376..1073779
Molecular Weight (calculated)
37400.2 Da
IEP (calculated)
5.257
GRAVY (calculated)
-0.275
Length
336 amino acids
Sequence
(BLAST)
(BLAST)
001: MAESVFSCIP EDVVFNIFFK LQDDPRNWAR LACVCTKFSS IVRNVCCKTQ CYSAIPTVIS DLLPLPPSAA ASASSSTAAD SSLTPPGGWA SLYKLAVCCP
101: GLFHAGILLE NSDFGLEREL GPDQNLDPKP TTTDLALNDE EVSKPVGSGL ETTSFWSLYD DLYTDTIPAP PPEDSIDDQE EEIETSEIRP GRDLPVRKRR
201: KICRSLGSHL ASGGWNLSRE QGNKLLASRF RGDCLYICNW PGCIHVEEKR NYMLFRGVFK DFKRSRVWRT INDGNRSKTS GLKCAFCLCD ETWDLHSSFC
301: LRRVFGFHDD GEPVVRAYVC ENGHVSGAWT ALPLYT
101: GLFHAGILLE NSDFGLEREL GPDQNLDPKP TTTDLALNDE EVSKPVGSGL ETTSFWSLYD DLYTDTIPAP PPEDSIDDQE EEIETSEIRP GRDLPVRKRR
201: KICRSLGSHL ASGGWNLSRE QGNKLLASRF RGDCLYICNW PGCIHVEEKR NYMLFRGVFK DFKRSRVWRT INDGNRSKTS GLKCAFCLCD ETWDLHSSFC
301: LRRVFGFHDD GEPVVRAYVC ENGHVSGAWT ALPLYT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.