Factsheet for HORVU5Hr1G077390.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G292100.1	Wheat	nucleus	94.62	95.65
TraesCS5D01G300100.1	Wheat	nucleus	94.27	95.29
TraesCS5A01G292900.1	Wheat	nucleus	94.98	94.31
Os09t0510500-01	Rice	nucleus	73.12	72.34
EER99171	Sorghum	nucleus	67.38	66.9
Zm00001d021086_P001	Maize	nucleus, plastid	65.59	63.76
HORVU7Hr1G055180.4	Barley	nucleus, plastid	59.5	56.46
Zm00001d006110_P002	Maize	nucleus, plastid	62.72	54.52
PGSC0003DMT400069568	Potato	nucleus	35.13	34.51
Solyc03g097820.1.1	Tomato	nucleus	40.14	33.94
VIT_17s0000g00430.t01	Wine grape	nucleus	42.29	33.81
PGSC0003DMT400051137	Potato	nucleus	40.86	33.73
KRH59766	Soybean	nucleus	40.5	33.04
KRH41084	Soybean	nucleus	39.43	32.45
CDY45806	Canola	nucleus	34.05	32.42
Bra022753.1-P	Field mustard	nucleus	34.41	32.32
CDX84885	Canola	nucleus	34.41	32.32
AT5G50915.2	Thale cress	nucleus	32.97	32.17
Solyc06g072520.1.1	Tomato	nucleus, plastid	32.97	31.83
KRH63842	Soybean	nucleus	39.43	31.79
KRH54121	Soybean	nucleus	38.71	30.95
HORVU5Hr1G107520.2	Barley	cytosol, nucleus	22.94	30.92
VIT_01s0244g00010.t01	Wine grape	nucleus	28.67	29.63
HORVU7Hr1G094690.1	Barley	plastid	22.94	25.91
GSMUA_Achr2P21460_001	Banana	nucleus	32.62	23.51
HORVU7Hr1G052870.23	Barley	nucleus	31.9	22.65
HORVU6Hr1G068980.2	Barley	nucleus	31.18	22.54
HORVU4Hr1G009970.28	Barley	nucleus	25.81	22.29
HORVU5Hr1G075430.5	Barley	nucleus, plastid	28.32	18.54
HORVU0Hr1G020200.1	Barley	nucleus	27.24	17.27
HORVU3Hr1G093310.2	Barley	nucleus, plasma membrane, plastid	28.32	12.42

Protein Annotations

EnsemblPlants:HORVU5Hr1G077390.1	EnsemblPlantsGene:HORVU5Hr1G077390	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR12565
PANTHER:PTHR12565:SF88	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353	SUPFAM:SSF47459
UniParc:UPI000295878E	UniProt:M0V0Z8	MapMan:15.5.32	MapMan:26.1.2.1.2	:	:

Description

No Description!

Coordinates

chrchr5H:+:553189435..553192099

Molecular Weight (calculated)

30668.0 Da

IEP (calculated)

6.316

GRAVY (calculated)

-0.643

Length

279 amino acids

Sequence
(BLAST)

001: MAGFSHLPQQ MEYGLTNAGS FLLCHGNPED AAAAASREGS SVVLDTPLVA TASMEKKRKP KEDTTASLNS AHSKETKEST RKRGGKKQDK ETAEEEEEPK
101: GYIHVRARRG QATDSHSLSE RVRRERISER MRMLQSLVPG CDKVTGKALI LDEIINYVQS LQNQVEFLSM RIASLSPVVY GFGMESEAAF SDQSHKIEGM
201: FHEAAALPTD PPMNRSSSPA PSQAMMDTVT SSSSPPYSLQ GTQDNGSSSS SYMMQTVGEP RHELFNQVVF SNYMCSFQQ

Best Arabidopsis Sequence Match ( AT5G50915.1 )
(BLAST)

001: MATFSYFQNY PHSLLDPLLF PTPHSSINLT SFIDQNHLYP LPNISTVEDI SFLEYNVDKT ENSGSEKLAN TTKTATTGSS SCDQLSHGPS AITNTGKTRG
101: RKARNSNNSK EGVEGRKSKK QKRGSKEEPP TDYIHVRARR GQATDSHSLA ERVRREKISE RMRTLQNLVP GCDKVTGKAL MLDEIINYVQ TLQTQVEFLS
201: MKLTSISPVV YDFGSDLDGL ILQSEMGSPE VGTSFTNAMP TTTPIFPSLL DNSVVPTHAQ VQEEGEEREN FVDRSGFNNN NFCSFP

Arabidopsis Description

BHLH137Transcription factor bHLH137 [Source:UniProtKB/Swiss-Prot;Acc:Q93W88]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.