Factsheet for HORVU5Hr1G075430.5

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G278600.1	Wheat	nucleus	81.69	93.3
TraesCS5D01G286300.5	Wheat	nucleus	81.92	93.07
TraesCS5A01G279200.2	Wheat	nucleus	82.39	90.93
Os09t0501600-01	Rice	nucleus	56.81	66.12
OQU89735	Sorghum	nucleus	52.82	63.92
Zm00001d021019_P001	Maize	nucleus	52.58	63.28
Zm00001d006065_P002	Maize	nucleus	48.83	59.43
HORVU7Hr1G052870.23	Barley	nucleus	43.9	47.58
HORVU5Hr1G107520.2	Barley	cytosol, nucleus	17.37	35.75
HORVU7Hr1G055180.4	Barley	nucleus, plastid	20.89	30.27
HORVU7Hr1G094690.1	Barley	plastid	16.67	28.74
HORVU4Hr1G009970.28	Barley	nucleus	21.6	28.48
HORVU5Hr1G077390.1	Barley	nucleus	18.54	28.32
Solyc09g057710.2.1	Tomato	nucleus	29.11	26.16
PGSC0003DMT400053639	Potato	nucleus	28.64	24.8
HORVU6Hr1G068980.2	Barley	nucleus	22.3	24.61
HORVU0Hr1G020200.1	Barley	nucleus	23.0	22.27
GSMUA_Achr10P...	Banana	nucleus	22.07	22.22
GSMUA_Achr7P22770_001	Banana	nucleus	22.54	21.72
GSMUA_Achr4P16120_001	Banana	nucleus	20.89	19.47
GSMUA_Achr7P02770_001	Banana	nucleus	22.3	19.47
HORVU3Hr1G093310.2	Barley	nucleus, plasma membrane, plastid	27.93	18.71

Protein Annotations

EnsemblPlants:HORVU5Hr1G075430.5	EnsemblPlantsGene:HORVU5Hr1G075430	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR12565
PANTHER:PTHR12565:SF169	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353	SUPFAM:SSF47459
UniParc:UPI000B46DE40	UniProt:A0A287RU40	MapMan:15.5.32	MapMan:26.1.2.1.2	:	:

Description

No Description!

Coordinates

chrchr5H:-:547123635..547125983

Molecular Weight (calculated)

44883.8 Da

IEP (calculated)

5.857

GRAVY (calculated)

-0.421

Length

426 amino acids

Sequence
(BLAST)

001: NPSAESPPHP PTVLPSPPAP TFPKSTSCFL PSFLRNHLFS SPLLCSSIGR PAREMDGDYV SGLLAGTAGL DFGVPGLDAG FFETLCGAGA AGAAGLAAMF
101: GDRAAGMPGF GNGGQFGPAE GGAAASREGS SVSDPAWAYG ANAKKRKAPA AGAAKGKEAA ATFAKMGEAT GPDSKKCKIE DETVRPKVEE EAATATASDG
201: SAGGERGRKQ AKGKVSKSKQ PAADEPPRDY VHVRARRGQA TDSHSLAERV RREKITLKMK MLQDLVPGCN KVIGKALMLD EIINYVQSLQ QQVEFLSMKL
301: STVNPQLDFD TLSNLLHKDM NQALGPSAST VFPLESAGTV YPLCDQADLY QPFSSGAMEN QCSMGLLDMA LPHAPQYPFQ KQQQDFWEAS AQNALHMEHG
401: QSQENAGSAP NFDGQLQAAD HPEIEF

Best Arabidopsis Sequence Match ( AT1G68920.1 )
(BLAST)

001: MDLSAKDEFS AEKRNPDNYD SVNNPSGDWR VDSYPSENLI SAGPASCSPS QMMDSFGQTL WYDPTSVQAV GYAGFNGGNA SSSSFRGSID RSLEMGWNLP
101: NLLPPKGNGL FLPNASSFLP PSMAQFPADS GFIERAARFS LFSGGNFSDM VNQPLGNSEA IGLFLQGGGT MQGQCQSNEL NVGEPHNDVS VAVKESTVRS
201: SEQAKPNVPG SGNVSEDTQS SGGNGQKGRE TSSNTKKRKR NGQKNSEAAQ SHRSQQSEEE PDNNGDEKRN DEQSPNSPGK KSNSGKQQGK QSSDPPKDGY
301: IHVRARRGQA TNSHSLAERV RREKISERMK FLQDLVPGCN KVTGKAVMLD EIINYVQSLQ RQVEFLSMKL ATVNPQMDFN LEGLLAKDAL QLRAGSSSTT
401: PFPPNMSMAY PPLPHGFMQQ TLSSIGRTIT SPLSPMNGGF KRQETNGWEG DLQNVIHINY GAGDVTPDPQ AAATASLPAA NMKVEP

Arabidopsis Description

BHLH49Transcription factor bHLH49 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAA9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.