Factsheet for Solyc06g065010.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	golgi

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g081170.1.1
Solyc01g109020.1.1
Solyc04g008430.1.1
Solyc04g028470.1.1
Solyc06g064960.2.1
Solyc06g064970.2.1
Solyc06g064980.2.1
Solyc06g064990.2.1
Solyc06g065010.2.1
Solyc11g021040.1.1
Solyc11g051060.1.1
Solyc11g051100.1.1
Solyc11g051120.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G54010.1	Solyc04g008430.1.1	AT2G01950.1	19000166
AT1G54030.1	Solyc01g081170.1.1	AT1G52400.1	23155454
AT1G54030.1	Solyc01g109020.1.1	AT1G54000.1	23155454
AT1G54030.1	Solyc04g028470.1.1	AT1G54000.1	23155454
AT1G54030.1	Solyc06g064960.2.1	AT1G54000.1	23155454
AT1G54030.1	Solyc06g064970.2.1	AT1G54000.1	23155454
AT1G54030.1	Solyc06g064980.2.1	AT1G54000.1	23155454
AT1G54030.1	Solyc06g064990.2.1	AT1G54000.1	23155454
AT1G54030.1	Solyc06g065010.2.1	AT1G54000.1	23155454
AT1G54030.1	Solyc11g021040.1.1	AT1G54000.1	23155454
AT1G54030.1	Solyc11g051060.1.1	AT1G54000.1	23155454
AT1G54030.1	Solyc11g051100.1.1	AT1G54000.1	23155454
AT1G54030.1	Solyc11g051120.1.1	AT1G54000.1	23155454
AT1G54030.1	Solyc01g109020.1.1	AT1G54010.1	23155454
AT1G54030.1	Solyc04g028470.1.1	AT1G54010.1	23155454
AT1G54030.1	Solyc06g064960.2.1	AT1G54010.1	23155454
AT1G54030.1	Solyc06g064970.2.1	AT1G54010.1	23155454
AT1G54030.1	Solyc06g064980.2.1	AT1G54010.1	23155454
AT1G54030.1	Solyc06g064990.2.1	AT1G54010.1	23155454
AT1G54030.1	Solyc06g065010.2.1	AT1G54010.1	23155454
AT1G54030.1	Solyc11g021040.1.1	AT1G54010.1	23155454
AT1G54030.1	Solyc11g051060.1.1	AT1G54010.1	23155454
AT1G54030.1	Solyc11g051100.1.1	AT1G54010.1	23155454
AT1G54030.1	Solyc11g051120.1.1	AT1G54010.1	23155454
AT1G54030.1	Solyc01g109020.1.1	AT1G54020.2	23155454
AT1G54030.1	Solyc04g028470.1.1	AT1G54020.2	23155454
AT1G54030.1	Solyc06g064960.2.1	AT1G54020.2	23155454
AT1G54030.1	Solyc06g064970.2.1	AT1G54020.2	23155454
AT1G54030.1	Solyc06g064980.2.1	AT1G54020.2	23155454
AT1G54030.1	Solyc06g064990.2.1	AT1G54020.2	23155454
AT1G54030.1	Solyc06g065010.2.1	AT1G54020.2	23155454
AT1G54030.1	Solyc11g021040.1.1	AT1G54020.2	23155454
AT1G54030.1	Solyc11g051060.1.1	AT1G54020.2	23155454
AT1G54030.1	Solyc11g051100.1.1	AT1G54020.2	23155454
AT1G54030.1	Solyc11g051120.1.1	AT1G54020.2	23155454
AT1G54030.1	Solyc01g081170.1.1	AT3G09260.1	23155454
AT1G54030.1	Solyc01g109020.1.1	AT3G14210.1	23155454
AT1G54030.1	Solyc04g028470.1.1	AT3G14210.1	23155454
AT1G54030.1	Solyc06g064960.2.1	AT3G14210.1	23155454
AT1G54030.1	Solyc06g064970.2.1	AT3G14210.1	23155454
AT1G54030.1	Solyc06g064980.2.1	AT3G14210.1	23155454
AT1G54030.1	Solyc06g064990.2.1	AT3G14210.1	23155454
AT1G54030.1	Solyc06g065010.2.1	AT3G14210.1	23155454
AT1G54030.1	Solyc11g021040.1.1	AT3G14210.1	23155454
AT1G54030.1	Solyc11g051060.1.1	AT3G14210.1	23155454
AT1G54030.1	Solyc11g051100.1.1	AT3G14210.1	23155454
AT1G54030.1	Solyc11g051120.1.1	AT3G14210.1	23155454
AT1G54030.1	Solyc01g081170.1.1	AT3G21370.1	23155454
AT3G14220.1	Solyc04g008430.1.1	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400080416	Potato	golgi, vacuole	91.71	91.71
Solyc01g109020.1.1	Tomato	extracellular	38.12	72.63
Solyc11g021040.1.1	Tomato	extracellular	41.44	71.77
Solyc06g064960.2.1	Tomato	extracellular	70.99	70.22
Solyc11g051060.1.1	Tomato	vacuole	67.4	67.78
Solyc06g064990.2.1	Tomato	extracellular	67.68	63.31
Solyc06g064980.2.1	Tomato	extracellular	66.85	63.19
KRG97291	Soybean	extracellular	17.68	60.95
Solyc11g051100.1.1	Tomato	cytosol, extracellular	11.6	59.15
Solyc06g064970.2.1	Tomato	extracellular, vacuole	52.49	53.07
KRG97292	Soybean	extracellular	52.21	51.64
KRH69020	Soybean	extracellular	49.72	51.43
VIT_09s0002g00540.t01	Wine grape	extracellular	55.52	51.02
KRG94370	Soybean	extracellular	51.1	50.68
Bra039701.1-P	Field mustard	extracellular, plasma membrane	44.48	50.16
VIT_09s0002g00530.t01	Wine grape	cytosol	47.24	49.71
VIT_09s0002g00510.t01	Wine grape	extracellular	50.55	49.59
VIT_09s0002g00520.t01	Wine grape	extracellular	43.37	49.22
VIT_09s0002g00580.t01	Wine grape	endoplasmic reticulum, golgi	49.72	49.18
Solyc12g049550.1.1	Tomato	extracellular	49.45	49.04
CDY24064	Canola	plasma membrane	50.28	48.4
KRH07083	Soybean	extracellular	36.46	48.0
KRH13794	Soybean	nucleus	48.62	47.7
KRH13793	Soybean	nucleus	48.34	47.43
CDY36617	Canola	plasma membrane	45.3	47.4
CDY02490	Canola	extracellular, vacuole	48.34	47.17
Bra030917.1-P	Field mustard	extracellular, vacuole	48.34	47.17
VIT_09s0002g00550.t01	Wine grape	extracellular	47.24	46.98
CDX98433	Canola	extracellular, vacuole	48.07	46.52
CDX97558	Canola	extracellular	47.79	46.26
Bra027356.1-P	Field mustard	extracellular	47.79	46.26
CDY30674	Canola	extracellular, vacuole	47.51	46.24
Bra014375.1-P	Field mustard	extracellular, vacuole	47.51	46.24
KRH47690	Soybean	extracellular, vacuole	46.69	46.17
AT5G40990.1	Thale cress	plasma membrane	47.51	45.99
AT1G53940.2	Thale cress	plasma membrane	47.51	45.74
CDY36619	Canola	endoplasmic reticulum, plasma membrane	46.41	45.28
Bra030916.1-P	Field mustard	plastid	45.03	44.9
VIT_09s0002g00570.t01	Wine grape	extracellular	45.86	44.74
VIT_09s0002g00500.t01	Wine grape	cytosol	35.36	43.99
AT1G53990.1	Thale cress	extracellular, plasma membrane	44.48	43.87
Solyc04g028470.1.1	Tomato	cytosol	38.67	43.75
AT1G53970.2	Thale cress	cytosol	11.6	43.3
KRH06260	Soybean	cytosol, peroxisome	32.32	43.01
CDY69407	Canola	extracellular	29.56	42.63
AT3G14225.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	43.09	41.38
CDY69208	Canola	mitochondrion	35.08	40.71
CDX97557	Canola	extracellular	41.16	39.95
CDX98432	Canola	extracellular	41.16	39.95
Bra027357.1-P	Field mustard	extracellular	40.88	39.68
CDY71922	Canola	extracellular, plasma membrane	24.03	39.19
Solyc11g051120.1.1	Tomato	cytosol	14.92	37.24
Solyc04g007570.1.1	Tomato	extracellular, plasma membrane, vacuole	30.39	30.14
CDY54192	Canola	extracellular	10.77	29.1
CDY51411	Canola	endoplasmic reticulum, extracellular, vacuole	27.9	27.98
Bra037955.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	30.39	27.92
CDY61480	Canola	extracellular, vacuole	29.83	27.41
Bra030911.1-P	Field mustard	extracellular, vacuole	29.83	27.34
CDY54197	Canola	extracellular, vacuole	29.83	27.34
AT3G14220.1	Thale cress	vacuole	27.35	27.27
Bra037957.1-P	Field mustard	extracellular	27.9	26.37
CDX75755	Canola	plastid	31.22	26.34
AT1G54020.2	Thale cress	endoplasmic reticulum	26.8	26.08
Bra014371.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	27.9	25.96
Bra030915.1-P	Field mustard	extracellular	27.62	25.91
Bra021542.1-P	Field mustard	vacuole	25.69	25.91
CDY39106	Canola	vacuole	25.69	25.91
CDY33240	Canola	vacuole	25.69	25.91
CDY36628	Canola	cytosol	27.35	25.85
CDY51412	Canola	cytosol	27.35	25.85
Bra037954.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi	27.35	25.85
CDY30675	Canola	endoplasmic reticulum, vacuole	27.35	25.71
CDY30680	Canola	mitochondrion	28.45	25.5
Bra014374.1-P	Field mustard	endoplasmic reticulum, vacuole	27.07	25.45
CDY08211	Canola	endoplasmic reticulum, vacuole	27.07	25.45
CDY54591	Canola	extracellular	27.07	25.32
Bra014372.1-P	Field mustard	extracellular	26.52	25.0
CDY08213	Canola	endoplasmic reticulum, extracellular, vacuole	26.52	25.0
AT1G54010.1	Thale cress	extracellular	26.52	24.87
CDY36623	Canola	endoplasmic reticulum	26.24	24.8
AT3G14210.1	Thale cress	extracellular, golgi	26.8	24.74
CDX97555	Canola	extracellular	25.97	24.35
CDY51410	Canola	mitochondrion, plastid	9.39	24.29
AT1G54000.1	Thale cress	endoplasmic reticulum, extracellular, vacuole	25.97	24.04
Bra027359.1-P	Field mustard	extracellular	24.86	23.94
CDY54588	Canola	extracellular	25.41	23.83
CDX98428	Canola	extracellular, plasma membrane, vacuole	25.41	23.71
CDY54196	Canola	extracellular	25.41	23.65
CDX97556	Canola	extracellular	25.14	23.45
Bra027358.1-P	Field mustard	extracellular	25.14	23.45
AT1G54030.1	Thale cress	endoplasmic reticulum, nucleus, vacuole	26.8	23.26
Bra030913.1-P	Field mustard	cytosol	17.68	22.86
CDY54194	Canola	cytosol	17.68	22.86
CDY08214	Canola	cytosol	17.4	22.83
CDY30676	Canola	cytosol	15.75	22.44
CDY36625	Canola	extracellular	8.29	22.06
Bra030912.1-P	Field mustard	extracellular	25.41	20.67
CDY54198	Canola	cytosol	6.35	17.29

Protein Annotations

EnsemblPlants:Solyc06g065010.2.1	EnsemblPlantsGene:Solyc06g065010.2	Gene3D:3.40.50.1110	GO:GO:0003674	GO:GO:0003824	GO:GO:0016787
GO:GO:0016788	InterPro:GDSL	InterPro:IPR036514	InterPro:SGNH_hydro_sf	InterPro:SGNH_plant_lipase_like	PANTHER:PTHR22835
PANTHER:PTHR22835:SF262	PFAM:PF00657	SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF52266	TMHMM:TMhelix
UniParc:UPI00027670F4	UniProt:K4C7D0	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr6:+:40537910..40540234

Molecular Weight (calculated)

40587.3 Da

IEP (calculated)

9.667

GRAVY (calculated)

-0.115

Length

362 amino acids

Sequence
(BLAST)

001: MALSSSLFHL YLCILVVCFV HPILCISSHG KPQAGLFVFG DSLFDPGNNN YINTTTEYQA NWRPYGESFF KYPTGRFSDG RLIPDFVAEY ANLPLIPSYF
101: EIGKQHFVHG VNFASGGAGC LVETHRGFVI DLQTQLRYFK KVVKLSKKKV GKTESKQIIS NAVYIFSAGG NDYLAPLSTN SSYPEREYLK MIMGNLTSVL
201: KGIYKEGGRK FVMLNMVPIG RLPNTIALNG NSIEKITSLV KMHNWALPGM LKQLEKQLPG FKYTLFDLFK VSSDSIDNPT KYGFKTSKTA CCGAGPLRGI
301: YSCGGKRQVK KYKLCKNVKD NLFFDSFHPS ELAYKQYAEV LWNGTPDIIA PYNLKSFFEL AT

Best Arabidopsis Sequence Match ( AT5G40990.1 )
(BLAST)

001: MENSQLVSIT FLAYTIIISI GSINCIDNNN LVTNQSALFV FGDSVFDAGN NNYIDTLSSV RSNYWPYGQT TFKSPTGRVS DGRLIPDFIA EYAWLPLIPP
101: NLQPFNGNSQ FAYGVNFASG GAGALVGTFS GLVINLRTQL NNFKKVEEML RSKLGDAEGK RVISRAVYLF HIGLNDYQYP FTTNSSLFQS ISNEKYVDYV
201: VGNMTDVFKE VYNLGGRKFG ILNTGPYDCA PASLVIDQTK IRSCFQPVTE LINMHNEKLL NGLRRLNHEL SGFKYALHDY HTSLSERMND PSKYGFKEGK
301: KACCGSGPLR GINTCGGRMG LSQSYELCEN VTDYLFFDPF HLTEKANRQI AELIWSGPTN ITGPYNLKAL FELN

Arabidopsis Description

GLIP1GDSL esterase/lipase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLN0]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.