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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular, endoplasmic reticulum, vacuole

Predictor Summary:
  • extracellular 7
  • golgi 5
  • plasma membrane 5
  • endoplasmic reticulum 6
  • vacuole 6
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, extracellular, vacuole
Any Predictor:secretory
BaCelLo:secretory
ChloroP:plastid
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:extracellular
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:extracellular
YLoc:vacuole
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra000640.1-P
Bra001320.1-P
Bra001631.1-P
Bra001786.1-P
Bra001787.1-P
Bra003836.1-P
Bra003837.1-P
Bra003839.1-P
Bra014372.1-P
Bra014374.1-P
Bra015981.1-P
Bra018969.1-P
Bra023886.1-P
Bra026178.1-P
Bra027359.1-P
Bra030386.1-P
Bra030912.1-P
Bra030913.1-P
Bra030915.1-P
Bra032150.1-P
Bra034060.1-P
Bra035787.1-P
Bra037954.1-P
Bra037957.1-P
Bra040903.1-P
Bra040904.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G54030.1 Bra018969.1-P AT1G52400.1 23155454
AT1G54030.1 Bra030386.1-P AT1G52400.1 23155454
AT1G54030.1 Bra014372.1-P AT1G54000.1 23155454
AT1G54030.1 Bra014374.1-P AT1G54000.1 23155454
AT1G54030.1 Bra030912.1-P AT1G54000.1 23155454
AT1G54030.1 Bra030915.1-P AT1G54000.1 23155454
AT1G54030.1 Bra014372.1-P AT1G54010.1 23155454
AT1G54030.1 Bra014374.1-P AT1G54010.1 23155454
AT1G54030.1 Bra030912.1-P AT1G54010.1 23155454
AT1G54030.1 Bra030915.1-P AT1G54010.1 23155454
AT1G54030.1 Bra030913.1-P AT1G54020.2 23155454
AT1G54030.1 Bra037954.1-P AT1G54020.2 23155454
AT1G54030.1 Bra037957.1-P AT1G54020.2 23155454
AT1G54030.1 Bra003836.1-P AT1G58270.1 23155454
AT1G54030.1 Bra003837.1-P AT1G58270.1 23155454
AT1G54030.1 Bra003839.1-P AT1G58270.1 23155454
AT1G54030.1 Bra015981.1-P AT1G58270.1 23155454
AT1G54030.1 Bra001320.1-P AT3G09260.1 23155454
AT1G54030.1 Bra034060.1-P AT3G09260.1 23155454
AT1G54030.1 Bra027359.1-P AT3G14210.1 23155454
AT1G54030.1 Bra001631.1-P AT3G16420.1 23155454
AT1G54030.1 Bra000640.1-P AT3G20370.1 23155454
AT1G54030.1 Bra001786.1-P AT3G20370.1 23155454
AT1G54030.1 Bra001787.1-P AT3G20370.1 23155454
AT1G54030.1 Bra032150.1-P AT3G20370.1 23155454
AT1G54030.1 Bra035787.1-P AT3G20370.1 23155454
AT1G54030.1 Bra040903.1-P AT3G20370.1 23155454
AT1G54030.1 Bra040904.1-P AT3G20370.1 23155454
AT1G54030.1 Bra023886.1-P AT3G21370.1 23155454
AT1G54030.1 Bra026178.1-P AT3G21370.1 23155454
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY51411 Canola endoplasmic reticulum, extracellular, vacuole 90.61 98.89
CDY36625 Canola extracellular 33.25 96.32
Bra014371.1-P Field mustard endoplasmic reticulum, extracellular, vacuole 85.28 86.38
Bra030911.1-P Field mustard extracellular, vacuole 84.26 84.05
AT1G54030.1 Thale cress endoplasmic reticulum, nucleus, vacuole 80.71 76.26
Bra030915.1-P Field mustard extracellular 37.82 38.6
Bra014374.1-P Field mustard endoplasmic reticulum, vacuole 37.56 38.44
Bra014372.1-P Field mustard extracellular 36.29 37.24
Bra021542.1-P Field mustard vacuole 33.5 36.77
PGSC0003DMT400016123 Potato cytosol 7.87 35.63
VIT_09s0002g00580.t01 Wine grape endoplasmic reticulum, golgi 31.98 34.43
KRH69020 Soybean extracellular 30.46 34.29
Bra027359.1-P Field mustard extracellular 32.49 34.04
Bra027358.1-P Field mustard extracellular 33.25 33.76
VIT_09s0002g00550.t01 Wine grape extracellular 30.71 33.24
Bra037954.1-P Field mustard endoplasmic reticulum, extracellular, golgi 32.23 33.16
KRG94370 Soybean extracellular 30.46 32.88
Bra014375.1-P Field mustard extracellular, vacuole 30.71 32.53
KRH47690 Soybean extracellular, vacuole 30.2 32.51
Solyc11g051060.1.1 Tomato vacuole 29.7 32.5
Bra037957.1-P Field mustard extracellular 31.47 32.38
Bra030917.1-P Field mustard extracellular, vacuole 30.46 32.34
KRH13794 Soybean nucleus 30.2 32.25
Bra030916.1-P Field mustard plastid 29.7 32.23
Bra030912.1-P Field mustard extracellular 36.29 32.13
Bra039701.1-P Field mustard extracellular, plasma membrane 26.14 32.09
PGSC0003DMT400016126 Potato plasma membrane, vacuole 29.7 31.88
Bra027357.1-P Field mustard extracellular 29.95 31.64
KRH13793 Soybean nucleus 29.44 31.44
KRG97291 Soybean extracellular 8.38 31.43
Solyc11g051100.1.1 Tomato cytosol, extracellular 5.58 30.99
KRH07083 Soybean extracellular 21.57 30.91
Bra027356.1-P Field mustard extracellular 29.19 30.75
Solyc06g065010.2.1 Tomato nucleus 27.92 30.39
PGSC0003DMT400080416 Potato golgi, vacuole 27.92 30.39
Solyc04g028470.1.1 Tomato cytosol 24.62 30.31
VIT_09s0002g00570.t01 Wine grape extracellular 28.43 30.19
KRG97292 Soybean extracellular 27.92 30.05
PGSC0003DMT400017106 Potato extracellular 28.17 30.0
Bra030913.1-P Field mustard cytosol 21.32 30.0
PGSC0003DMT400074599 Potato cytosol 25.13 29.91
Solyc06g064960.2.1 Tomato extracellular 27.16 29.23
PGSC0003DMT400013272 Potato extracellular, vacuole 27.16 29.16
Solyc06g064990.2.1 Tomato extracellular 27.92 28.42
Solyc01g109020.1.1 Tomato extracellular 13.71 28.42
Bra030918.1-P Field mustard plastid 22.34 28.3
Solyc06g064980.2.1 Tomato extracellular 27.16 27.94
KRH06260 Soybean cytosol, peroxisome 18.78 27.21
Solyc11g021040.1.1 Tomato extracellular 14.21 26.79
Solyc11g051120.1.1 Tomato cytosol 8.88 24.14
Bra007962.1-P Field mustard extracellular, vacuole 21.57 24.01
Solyc06g064970.2.1 Tomato extracellular, vacuole 21.32 23.46
Protein Annotations
Gene3D:3.40.50.1110MapMan:35.1EnsemblPlantsGene:Bra037955EnsemblPlants:Bra037955.1EnsemblPlants:Bra037955.1-PInterPro:GDSL
GO:GO:0003674GO:GO:0003824GO:GO:0016787GO:GO:0016788InterPro:IPR036514UniProt:M4FA41
PFAM:PF00657PANTHER:PTHR22835PANTHER:PTHR22835:SF461InterPro:SGNH_hydro_sfInterPro:SGNH_plant_lipase_likeSignalP:SignalP-noTM
TMHMM:TMhelixUniParc:UPI000253E715SEG:seg:::
Description
AT1G54030 (E=4e-174) | GDSL-motif lipase, putative
Coordinates
chrA06:-:445017..448958
Molecular Weight (calculated)
43578.9 Da
IEP (calculated)
5.649
GRAVY (calculated)
-0.107
Length
394 amino acids
Sequence
(BLAST)
001: MANPKSHLFS LSFFSFLLLH FPTVSLAQTL FVFGDGLYDT GNKQIISSNR VDASFPPYGN TLGEATGRWS DGLIIPDYLA GFMNIPQIPP VLRSTSDFSH
101: GANFAIADAT VLGSPPETLT LSQQVMKFSE NKNKWTIQAR SEAIYLFYIG SNDYLNYAKN NPNPSADQKE AFVDRVITSI EAELKVIYGS GGRKFALQNL
201: APLGCLPAVK QASGNVQECV RLPSEMAALH NKKLLQLLGE LSRELSGFQY SFYDFFSSIQ NRVIKSKTYT FETGIAACCG TGSVNGSSCS TNNVCAHPED
301: YLFFDGKHLT QEGNLQAGHL MWGSDPVVIG PNNLRELLFL PLDSTFILAD IQEAMAATRP RQIKIESIYD IKKMESEMET QWLYQVDKAS SFLI
Best Arabidopsis Sequence Match ( AT1G54030.1 )
(BLAST)
001: MLLIPSFTAN SNEPPPSKLS LSDLSMAILK SHFFLLFPLL LLHFHTVSFA QTLFVFGDGL YDAGNKQFLS QNRVDASFPP YGVTVGQATG RWSDGSIVPD
101: YLAKFMGIPK ISPILLTTAD FSHGANFAIA DATVLGSPPE TMTLSQQVKK FSENKNKWTN QTRSEAIYLI YIGSDDYLSY AKSNPSPSDT QKQAFVDQVI
201: TTIKAEIKVV YGSGGRKFAF QNLAPLGCLP AVKQASGNVQ ECVKLPSEMA ALHNKKLLQL LVELSRELNG FQYSFYDFFS SIQNRVIKSK TYTFETGNAA
301: CCGTGSINGS NCSAKNVCAK PEEYIFFDGK HLTQEANLQV GHLMWGADPE VIGPNNIREL MVLPLDITVI LAGIQEAMAA MRPRQSNIES LYDIKKMESE
401: MDNHWLYQVD KAISFMI
Arabidopsis Description
MVP1Inactive GDSL esterase/lipase-like protein 25 [Source:UniProtKB/Swiss-Prot;Acc:Q7XA74]
SUBAcon: [nucleus,endoplasmic reticulum,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.