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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 1
  • cytosol 2
  • mitochondrion 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400013272
PGSC0003DMT400016123
PGSC0003DMT400016126
PGSC0003DMT400017106
PGSC0003DMT400074599
PGSC0003DMT400075691
PGSC0003DMT400080416

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G54010.1 PGSC0003DMT400075691 AT2G01950.1 19000166
AT1G54030.1 PGSC0003DMT400013272 AT1G54000.1 23155454
AT1G54030.1 PGSC0003DMT400016123 AT1G54000.1 23155454
AT1G54030.1 PGSC0003DMT400016126 AT1G54000.1 23155454
AT1G54030.1 PGSC0003DMT400017106 AT1G54000.1 23155454
AT1G54030.1 PGSC0003DMT400074599 AT1G54000.1 23155454
AT1G54030.1 PGSC0003DMT400080416 AT1G54000.1 23155454
AT1G54030.1 PGSC0003DMT400013272 AT1G54010.1 23155454
AT1G54030.1 PGSC0003DMT400016123 AT1G54010.1 23155454
AT1G54030.1 PGSC0003DMT400016126 AT1G54010.1 23155454
AT1G54030.1 PGSC0003DMT400017106 AT1G54010.1 23155454
AT1G54030.1 PGSC0003DMT400074599 AT1G54010.1 23155454
AT1G54030.1 PGSC0003DMT400080416 AT1G54010.1 23155454
AT1G54030.1 PGSC0003DMT400013272 AT1G54020.2 23155454
AT1G54030.1 PGSC0003DMT400016123 AT1G54020.2 23155454
AT1G54030.1 PGSC0003DMT400016126 AT1G54020.2 23155454
AT1G54030.1 PGSC0003DMT400017106 AT1G54020.2 23155454
AT1G54030.1 PGSC0003DMT400074599 AT1G54020.2 23155454
AT1G54030.1 PGSC0003DMT400080416 AT1G54020.2 23155454
AT1G54030.1 PGSC0003DMT400013272 AT3G14210.1 23155454
AT1G54030.1 PGSC0003DMT400016123 AT3G14210.1 23155454
AT1G54030.1 PGSC0003DMT400016126 AT3G14210.1 23155454
AT1G54030.1 PGSC0003DMT400017106 AT3G14210.1 23155454
AT1G54030.1 PGSC0003DMT400074599 AT3G14210.1 23155454
AT1G54030.1 PGSC0003DMT400080416 AT3G14210.1 23155454
AT3G14220.1 PGSC0003DMT400075691 AT2G01950.1 19000166
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc04g028470.1.1 Tomato cytosol 84.29 87.19
VIT_09s0002g00530.t01 Wine grape cytosol 47.13 45.35
VIT_09s0002g00500.t01 Wine grape cytosol 39.58 45.02
PGSC0003DMT400016126 Potato plasma membrane, vacuole 49.24 44.41
PGSC0003DMT400080416 Potato golgi, vacuole 48.04 43.92
PGSC0003DMT400013272 Potato extracellular, vacuole 46.83 42.23
KRH06260 Soybean cytosol, peroxisome 34.44 41.91
PGSC0003DMT400074252 Potato extracellular 46.53 41.73
KRH69020 Soybean extracellular 44.11 41.71
VIT_09s0002g00510.t01 Wine grape extracellular 45.62 40.92
KRG97292 Soybean extracellular 44.41 40.16
KRH47690 Soybean extracellular, vacuole 44.41 40.16
VIT_09s0002g00520.t01 Wine grape extracellular 38.37 39.81
VIT_09s0002g00540.t01 Wine grape extracellular 47.13 39.59
PGSC0003DMT400016123 Potato cytosol 10.27 39.08
Bra039701.1-P Field mustard extracellular, plasma membrane 37.76 38.94
VIT_09s0002g00580.t01 Wine grape endoplasmic reticulum, golgi 42.6 38.52
KRG94370 Soybean extracellular 42.3 38.36
KRH13793 Soybean nucleus 42.6 38.21
KRG97291 Soybean extracellular 12.08 38.1
KRH13794 Soybean nucleus 42.3 37.94
VIT_09s0002g00550.t01 Wine grape extracellular 41.69 37.91
CDY24064 Canola plasma membrane 42.6 37.5
Bra027356.1-P Field mustard extracellular 42.3 37.43
CDX97558 Canola extracellular 42.3 37.43
CDX98433 Canola extracellular, vacuole 42.3 37.43
AT5G40990.1 Thale cress plasma membrane 41.99 37.17
PGSC0003DMT400017106 Potato extracellular 41.09 36.76
CDY30674 Canola extracellular, vacuole 40.79 36.29
CDY36617 Canola plasma membrane 37.76 36.13
Bra014375.1-P Field mustard extracellular, vacuole 40.48 36.02
VIT_09s0002g00570.t01 Wine grape extracellular 40.18 35.85
CDY36619 Canola endoplasmic reticulum, plasma membrane 39.88 35.58
Bra030916.1-P Field mustard plastid 38.67 35.26
Bra030917.1-P Field mustard extracellular, vacuole 39.27 35.04
CDY02490 Canola extracellular, vacuole 39.27 35.04
AT1G53990.1 Thale cress extracellular, plasma membrane 38.67 34.88
AT1G53940.2 Thale cress plasma membrane 39.58 34.84
CDY69407 Canola extracellular 25.38 33.47
CDY69208 Canola mitochondrion 31.42 33.33
AT3G14225.1 Thale cress endoplasmic reticulum, plasma membrane, vacuole 37.76 33.16
AT1G53970.2 Thale cress cytosol 9.67 32.99
CDX97557 Canola extracellular 36.25 32.17
Bra027357.1-P Field mustard extracellular 36.25 32.17
KRH07083 Soybean extracellular 26.59 32.0
CDX98432 Canola extracellular 35.65 31.64
CDY71922 Canola extracellular, plasma membrane 19.03 28.38
CDY51411 Canola endoplasmic reticulum, extracellular, vacuole 28.4 26.04
CDY33240 Canola vacuole 27.49 25.35
Bra037955.1-P Field mustard endoplasmic reticulum, extracellular, vacuole 29.91 25.13
CDY61480 Canola extracellular, vacuole 29.61 24.87
Bra030911.1-P Field mustard extracellular, vacuole 29.61 24.81
CDY54197 Canola extracellular, vacuole 29.61 24.81
AT3G14220.1 Thale cress vacuole 27.19 24.79
Bra021542.1-P Field mustard vacuole 26.89 24.79
CDY39106 Canola vacuole 26.89 24.79
Bra027359.1-P Field mustard extracellular 27.79 24.47
Bra014371.1-P Field mustard endoplasmic reticulum, extracellular, vacuole 28.7 24.42
CDY54192 Canola extracellular 9.67 23.88
CDX97555 Canola extracellular 27.79 23.83
CDY30675 Canola endoplasmic reticulum, vacuole 27.49 23.64
CDY30680 Canola mitochondrion 28.7 23.51
Bra014374.1-P Field mustard endoplasmic reticulum, vacuole 27.19 23.38
CDY08211 Canola endoplasmic reticulum, vacuole 27.19 23.38
Bra030915.1-P Field mustard extracellular 27.19 23.32
CDX98428 Canola extracellular, plasma membrane, vacuole 27.19 23.2
Bra027358.1-P Field mustard extracellular 27.19 23.2
CDX97556 Canola extracellular 27.19 23.2
CDY08214 Canola cytosol 19.34 23.19
AT1G54020.2 Thale cress endoplasmic reticulum 25.98 23.12
AT1G54010.1 Thale cress extracellular 26.89 23.06
CDX75755 Canola plastid 29.31 22.61
AT3G14210.1 Thale cress extracellular, golgi 26.59 22.45
AT1G54000.1 Thale cress endoplasmic reticulum, extracellular, vacuole 26.28 22.25
CDY54591 Canola extracellular 25.98 22.22
Bra037957.1-P Field mustard extracellular 25.68 22.19
CDY08213 Canola endoplasmic reticulum, extracellular, vacuole 25.68 22.14
Bra014372.1-P Field mustard extracellular 25.68 22.14
AT1G54030.1 Thale cress endoplasmic reticulum, nucleus, vacuole 27.79 22.06
CDY51412 Canola cytosol 25.38 21.93
CDY36628 Canola cytosol 25.38 21.93
Bra037954.1-P Field mustard endoplasmic reticulum, extracellular, golgi 25.38 21.93
CDY30676 Canola cytosol 16.62 21.65
CDY36623 Canola endoplasmic reticulum 24.47 21.15
CDY54588 Canola extracellular 24.47 20.98
CDY54196 Canola extracellular 24.47 20.82
PGSC0003DMT400096676 Potato mitochondrion 26.28 20.62
CDY36625 Canola extracellular 8.46 20.59
CDY54194 Canola cytosol 16.31 19.29
Bra030913.1-P Field mustard cytosol 16.31 19.29
Bra030912.1-P Field mustard extracellular 24.47 18.2
CDY54198 Canola cytosol 6.95 17.29
CDY51410 Canola mitochondrion, plastid 7.25 17.14
Protein Annotations
EnsemblPlants:PGSC0003DMT400074599EnsemblPlantsGene:PGSC0003DMG400029004Gene3D:3.40.50.1110GO:GO:0003674GO:GO:0003824GO:GO:0016787
GO:GO:0016788InterPro:GDSLInterPro:IPR036514InterPro:SGNH_hydro_sfInterPro:SGNH_plant_lipase_likePANTHER:PTHR22835
PANTHER:PTHR22835:SF262PFAM:PF00657PGSC:PGSC0003DMG400029004UniParc:UPI000295A6B0UniProt:M1CTX6MapMan:35.1
Description
Zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400029004]
Coordinates
chr4:-:18480940..18484597
Molecular Weight (calculated)
37365.9 Da
IEP (calculated)
8.663
GRAVY (calculated)
-0.238
Length
331 amino acids
Sequence
(BLAST)
001: MFDPGNNNYI INPSAYKANF EPYGKSYFKH PTGRFSDGRL VPDFIAEFAN LPMIPSFYQA LHNHSINHGV NFASAGAGCL DETYSEKVIS LNTQLGNFKI
101: IRKKLKAQLG KKGSKALLSN AVYLFSIGNN DYLRLYDIPD IPSDMSCLAY ATEHEYMNMV MDSFVTVMME IYKLGGRKFG IQGLLPLGCL PRFRGLAFLK
201: EGPHSDCLDE LNSIVKKHNL ALSRKFKQLK KKLRGFEYSF FSIFDALNEL FEDPSTYGFK EAKAACCGFG PYRGFGSCGM AEAYELCKNV KEHVIFDSYH
301: PTEKAFHHFA RVWWQGNSNV VESQSLKSLL A
Best Arabidopsis Sequence Match ( AT1G53920.1 )
(BLAST)
001: MRESTLMEKV TRRTISSFIF FIVSSTILFL AGKSSAKISH NGDNNVTALF LFGDSFLDAG NNNYINTTTL DQANFPPYGQ TFFGLPTGRF SDGRLISDFI
101: AEYANLPLIP PFLEPGNSQK KLYGVNFASA GAGALVETFQ GSVINLRTQL DHYKKVERLW RTNFGKEESK KRISRAVYLI SIGSNDYSSI FLTNQSLPIS
201: MSQHVDIVIG NLTTFIHEIY KIGGRKFGFL NVPDLGCFPA LRILQPKNDD SCLRDASRLA SMHNRALTNL LFQMQRQVKG FKFSLFDMNK SLRLRMQHPS
301: KFGFKEGEEA CCGTGKWRGV FSCGGKRIVK EYQLCENPKD YIFWDSLHLT QNTYNQFANL IWNGGHMSDS LVVGPYNINN LFQIP
Arabidopsis Description
GLIP5GLIP5 [Source:UniProtKB/TrEMBL;Acc:A0A178WKF5]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.