Factsheet for PGSC0003DMT400074252

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
golgi 5
plasma membrane 6
endoplasmic reticulum 5
vacuole 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g049550.1.1	Tomato	extracellular	92.14	93.15
VIT_09s0002g00490.t01	Wine grape	vacuole	60.16	58.89
KRH06261	Soybean	extracellular, vacuole	56.1	55.05
KRH47692	Soybean	extracellular, vacuole	55.83	54.79
AT1G53920.1	Thale cress	cytosol	55.01	52.73
Bra030918.1-P	Field mustard	plastid	43.09	51.13
CDY25680	Canola	extracellular, plasma membrane	22.76	50.3
CDY02491	Canola	plastid	23.04	50.0
PGSC0003DMT400080416	Potato	golgi, vacuole	49.05	50.0
PGSC0003DMT400016126	Potato	plasma membrane, vacuole	49.59	49.86
PGSC0003DMT400074599	Potato	cytosol	41.73	46.53
PGSC0003DMT400013272	Potato	extracellular, vacuole	45.26	45.5
PGSC0003DMT400017106	Potato	extracellular	45.26	45.14
PGSC0003DMT400016123	Potato	cytosol	9.76	41.38
PGSC0003DMT400096676	Potato	mitochondrion	26.29	22.99

Protein Annotations

EntrezGene:102585891	Gene3D:3.40.50.1110	MapMan:35.1	InterPro:GDSL	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016788	InterPro:IPR036514
UniProt:M1CTE6	PFAM:PF00657	EnsemblPlantsGene:PGSC0003DMG400028854	PGSC:PGSC0003DMG400028854	EnsemblPlants:PGSC0003DMT400074252	PANTHER:PTHR22835
PANTHER:PTHR22835:SF461	InterPro:SGNH_hydro_sf	InterPro:SGNH_plant_lipase_like	SUPFAM:SSF52266	SignalP:SignalP-TM	TMHMM:TMhelix
UniParc:UPI0002959226	RefSeq:XP_006362094.1	SEG:seg	:	:	:

Description

Zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400028854]

Coordinates

chr12:-:53024202..53031031

Molecular Weight (calculated)

41578.2 Da

IEP (calculated)

9.322

GRAVY (calculated)

-0.170

Length

369 amino acids

Sequence
(BLAST)

001: MAKPLGTSNF TLVLIIFLYL LTYCFHIHIV ECQCQKTKGK ASLFIFGDSF FDVGNNNYIN TTTLDQANFE PYGETYFKFP TGRFSDGRLI SDFIAEYAKL
101: PLLPPFLQPS SQHSYYNGAN FASAGAGALV TTFQGSVIDM ETQLKNFKKV KSWLRNKLGK GKSQNILSNA VYLFSIGTND YLSLFVTNSS IPISPQYQQM
201: VVGNLTTIVQ EIYKIGGRKF GFLNLGDLGC LPGLRMLNSS NKNGCLEKAS NMAKLHNVEL YNTLLKMEKQ LKGFKYSLYD FNSSLRERID HPSKYGLKEG
301: KIACCGIGRF RGIHSCGGKR PVGHKFELCQ NPNMHVFWDS YHLTETIYHQ MAAEMWNGSS TFKSLFQCL

Best Arabidopsis Sequence Match ( AT1G53920.1 )
(BLAST)

001: MRESTLMEKV TRRTISSFIF FIVSSTILFL AGKSSAKISH NGDNNVTALF LFGDSFLDAG NNNYINTTTL DQANFPPYGQ TFFGLPTGRF SDGRLISDFI
101: AEYANLPLIP PFLEPGNSQK KLYGVNFASA GAGALVETFQ GSVINLRTQL DHYKKVERLW RTNFGKEESK KRISRAVYLI SIGSNDYSSI FLTNQSLPIS
201: MSQHVDIVIG NLTTFIHEIY KIGGRKFGFL NVPDLGCFPA LRILQPKNDD SCLRDASRLA SMHNRALTNL LFQMQRQVKG FKFSLFDMNK SLRLRMQHPS
301: KFGFKEGEEA CCGTGKWRGV FSCGGKRIVK EYQLCENPKD YIFWDSLHLT QNTYNQFANL IWNGGHMSDS LVVGPYNINN LFQIP

Arabidopsis Description

GLIP5GLIP5 [Source:UniProtKB/TrEMBL;Acc:A0A178WKF5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.