Subcellular Localization
min:
: max
Winner_takes_all: extracellular, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- extracellular 3
- golgi 2
- plasma membrane 3
- endoplasmic reticulum 2
- vacuole 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY02491 | Canola | plastid | 99.4 | 97.65 |
| Bra030918.1-P | Field mustard | plastid | 89.22 | 47.91 |
| CDY09515 | Canola | endoplasmic reticulum, extracellular, golgi | 29.94 | 38.17 |
| AT1G53920.1 | Thale cress | cytosol | 80.24 | 34.81 |
| CDY71922 | Canola | extracellular, plasma membrane | 41.92 | 31.53 |
| CDY54192 | Canola | extracellular | 23.35 | 29.1 |
| VIT_09s0002g00490.t01 | Wine grape | vacuole | 53.89 | 23.87 |
| KRH06261 | Soybean | extracellular, vacuole | 52.69 | 23.4 |
| Solyc12g049550.1.1 | Tomato | extracellular | 50.3 | 23.01 |
| PGSC0003DMT400074252 | Potato | extracellular | 50.3 | 22.76 |
| KRH47692 | Soybean | extracellular, vacuole | 50.3 | 22.34 |
| CDY02490 | Canola | extracellular, vacuole | 49.1 | 22.1 |
| CDY30674 | Canola | extracellular, vacuole | 47.9 | 21.51 |
| CDY36619 | Canola | endoplasmic reticulum, plasma membrane | 47.31 | 21.29 |
| CDX98433 | Canola | extracellular, vacuole | 47.31 | 21.12 |
| CDX97558 | Canola | extracellular | 46.71 | 20.86 |
| CDY24064 | Canola | plasma membrane | 45.51 | 20.21 |
| CDX98432 | Canola | extracellular | 37.72 | 16.89 |
| CDX97557 | Canola | extracellular | 37.72 | 16.89 |
| CDY36617 | Canola | plasma membrane | 34.73 | 16.76 |
| CDX75755 | Canola | plastid | 34.73 | 13.52 |
| CDY36628 | Canola | cytosol | 28.74 | 12.53 |
| CDY51411 | Canola | endoplasmic reticulum, extracellular, vacuole | 26.95 | 12.47 |
| CDX97555 | Canola | extracellular | 28.74 | 12.44 |
| CDY51412 | Canola | cytosol | 28.14 | 12.27 |
| CDY08211 | Canola | endoplasmic reticulum, vacuole | 28.14 | 12.21 |
| CDY30675 | Canola | endoplasmic reticulum, vacuole | 28.14 | 12.21 |
| CDY54588 | Canola | extracellular | 28.14 | 12.18 |
| CDY54197 | Canola | extracellular, vacuole | 28.74 | 12.15 |
| CDY54196 | Canola | extracellular | 28.14 | 12.08 |
| CDY36623 | Canola | endoplasmic reticulum | 27.54 | 12.01 |
| CDY61480 | Canola | extracellular, vacuole | 28.14 | 11.93 |
| CDX97556 | Canola | extracellular | 27.54 | 11.86 |
| CDY33240 | Canola | vacuole | 25.15 | 11.7 |
| CDX98428 | Canola | extracellular, plasma membrane, vacuole | 26.95 | 11.6 |
| CDY08213 | Canola | endoplasmic reticulum, extracellular, vacuole | 26.35 | 11.46 |
| CDY39106 | Canola | vacuole | 24.55 | 11.42 |
| CDY54591 | Canola | extracellular | 26.35 | 11.37 |
| CDY69208 | Canola | mitochondrion | 20.36 | 10.9 |
| CDY30680 | Canola | mitochondrion | 25.75 | 10.64 |
| CDY54194 | Canola | cytosol | 10.18 | 6.07 |
| CDY69407 | Canola | extracellular | 6.59 | 4.38 |
| CDY30676 | Canola | cytosol | 4.19 | 2.76 |
| CDY54198 | Canola | cytosol | 1.8 | 2.26 |
| CDY36625 | Canola | extracellular | 1.2 | 1.47 |
| CDY08214 | Canola | cytosol | 2.4 | 1.45 |
| CDY51410 | Canola | mitochondrion, plastid | 1.2 | 1.43 |
Protein Annotations
| EnsemblPlants:CDY25680 | EnsemblPlantsGene:GSBRNA2T00033019001 | Gene3D:3.40.50.1110 | InterPro:IPR036514 | InterPro:SGNH_hydro_sf | PANTHER:PTHR22835 |
| PANTHER:PTHR22835:SF461 | ProteinID:CDY25680 | ProteinID:CDY25680.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EE423A |
| UniProt:A0A078GGV0 | MapMan:35.1 | : | : | : | : |
Description
BnaC03g69950DBnaC03g69950D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GGV0]
Coordinates
chrLK032179:-:16107..16924
Molecular Weight (calculated)
18470.1 Da
IEP (calculated)
7.251
GRAVY (calculated)
0.189
Length
167 amino acids
Sequence
(BLAST)
(BLAST)
001: MRKSTLMEKV TRRTISSSSF FLCFFIFSSS ILFLAGKSAA KVSYDGDNDD NVTALFIFGD SFLDAGNNNY INTTTLDQAN FPPYGQTFFG LPTGRFSDGR
101: LISDFIAEYA KLPLIPPFLE PGDSQKKLCG VNFASAGAGA LVETFQGSVR ILAFHLYFIL KLFEIFK
101: LISDFIAEYA KLPLIPPFLE PGDSQKKLCG VNFASAGAGA LVETFQGSVR ILAFHLYFIL KLFEIFK
001: MRESTLMEKV TRRTISSFIF FIVSSTILFL AGKSSAKISH NGDNNVTALF LFGDSFLDAG NNNYINTTTL DQANFPPYGQ TFFGLPTGRF SDGRLISDFI
101: AEYANLPLIP PFLEPGNSQK KLYGVNFASA GAGALVETFQ GSVINLRTQL DHYKKVERLW RTNFGKEESK KRISRAVYLI SIGSNDYSSI FLTNQSLPIS
201: MSQHVDIVIG NLTTFIHEIY KIGGRKFGFL NVPDLGCFPA LRILQPKNDD SCLRDASRLA SMHNRALTNL LFQMQRQVKG FKFSLFDMNK SLRLRMQHPS
301: KFGFKEGEEA CCGTGKWRGV FSCGGKRIVK EYQLCENPKD YIFWDSLHLT QNTYNQFANL IWNGGHMSDS LVVGPYNINN LFQIP
101: AEYANLPLIP PFLEPGNSQK KLYGVNFASA GAGALVETFQ GSVINLRTQL DHYKKVERLW RTNFGKEESK KRISRAVYLI SIGSNDYSSI FLTNQSLPIS
201: MSQHVDIVIG NLTTFIHEIY KIGGRKFGFL NVPDLGCFPA LRILQPKNDD SCLRDASRLA SMHNRALTNL LFQMQRQVKG FKFSLFDMNK SLRLRMQHPS
301: KFGFKEGEEA CCGTGKWRGV FSCGGKRIVK EYQLCENPKD YIFWDSLHLT QNTYNQFANL IWNGGHMSDS LVVGPYNINN LFQIP
Arabidopsis Description
GLIP5GLIP5 [Source:UniProtKB/TrEMBL;Acc:A0A178WKF5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.