CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, golgi, endoplasmic reticulum

Predictor Summary:

extracellular 6
golgi 6
plasma membrane 5
endoplasmic reticulum 6
vacuole 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, golgi
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	golgi
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007962.1-P	Field mustard	extracellular, vacuole	94.66	35.03
CDY25680	Canola	extracellular, plasma membrane	38.17	29.94
AT1G71120.1	Thale cress	endoplasmic reticulum	82.44	29.83
CDY02491	Canola	plastid	38.17	29.41
CDY54192	Canola	extracellular	29.01	28.36
VIT_01s0011g04540.t01	Wine grape	extracellular	73.28	26.74
Solyc04g007570.1.1	Tomato	extracellular, plasma membrane, vacuole	63.36	22.74
CDY71922	Canola	extracellular, plasma membrane	33.59	19.82
PGSC0003DMT400096676	Potato	mitochondrion	51.15	15.88
CDX98433	Canola	extracellular, vacuole	37.4	13.1
CDX97558	Canola	extracellular	36.64	12.83
CDY02490	Canola	extracellular, vacuole	35.11	12.4
CDY36619	Canola	endoplasmic reticulum, plasma membrane	34.35	12.13
CDY30674	Canola	extracellular, vacuole	33.59	11.83
CDY24064	Canola	plasma membrane	33.59	11.7
CDY08211	Canola	endoplasmic reticulum, vacuole	32.82	11.17
CDY30675	Canola	endoplasmic reticulum, vacuole	32.82	11.17
CDY36628	Canola	cytosol	32.06	10.97
CDX98428	Canola	extracellular, plasma membrane, vacuole	32.06	10.82
CDX97557	Canola	extracellular	30.53	10.72
CDX98432	Canola	extracellular	30.53	10.72
CDX97555	Canola	extracellular	31.3	10.62
CDY33240	Canola	vacuole	29.01	10.59
CDX97556	Canola	extracellular	31.3	10.57
CDY36623	Canola	endoplasmic reticulum	30.53	10.44
CDY51412	Canola	cytosol	30.53	10.44
CDY54197	Canola	extracellular, vacuole	31.3	10.38
CDY39106	Canola	vacuole	28.24	10.31
CDY08213	Canola	endoplasmic reticulum, extracellular, vacuole	29.77	10.16
CDY61480	Canola	extracellular, vacuole	30.53	10.15
CDY54588	Canola	extracellular	28.24	9.59
CDY36617	Canola	plasma membrane	25.19	9.54
CDY54196	Canola	extracellular	28.24	9.51
CDY51411	Canola	endoplasmic reticulum, extracellular, vacuole	25.95	9.42
CDY30680	Canola	mitochondrion	29.01	9.41
CDY54591	Canola	extracellular	27.48	9.3
CDX75755	Canola	plastid	28.24	8.62
CDY69208	Canola	mitochondrion	13.74	5.77
CDY54194	Canola	cytosol	6.11	2.86
CDY69407	Canola	extracellular	1.53	0.8
CDY30676	Canola	cytosol	0.76	0.39
CDY54198	Canola	cytosol	0.0	0.0
CDY51410	Canola	mitochondrion, plastid	0.0	0.0
CDY36625	Canola	extracellular	0.0	0.0
CDY08214	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY09515	EnsemblPlantsGene:GSBRNA2T00031090001	Gene3D:3.40.50.1110	InterPro:IPR036514	InterPro:SGNH_hydro_sf	PANTHER:PTHR22835
PANTHER:PTHR22835:SF187	ProteinID:CDY09515	ProteinID:CDY09515.1	SEG:seg	SignalP:SignalP-noTM	UniParc:UPI0004EE9B01
UniProt:A0A078F509	MapMan:35.1	:	:	:	:

Description

BnaC02g20570DBnaC02g20570D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F509]

Coordinates

chrLK031996:-:929654..930139

Molecular Weight (calculated)

14186.1 Da

IEP (calculated)

7.615

GRAVY (calculated)

0.176

Length

131 amino acids

Sequence
(BLAST)

001: MSSMELLVTL LLLASPVALA KSSPSLPAIF TFGDSIFDAG NNHFNKNCTA QADFPPYGSS FFHQPTGRFT NGRTVADFIS QFIGLPLQKP FLELHIQILN
101: GTLKRFPSNG INFASAGSGF LLDTNKDMVT I

Best Arabidopsis Sequence Match ( AT1G71120.1 )
(BLAST)

001: MSSSSSMDLL MCLLLLISPV VLAKSSSTVP AIFTFGDSIF DAGNNHYNKN CTAQADFPPY GSSFFHRPTG RFTNGRTVAD FISEFVGLPL QKPFLELQIQ
101: ILNGTSNFSN GINFASAGSG LLLDTNKFMG VTPIQTQLQQ FQTLVEQNLI EKSIIQESLF LLETGSNDIF NYFLPFRAPT LSPDAYVNAM LDQVNKTIDQ
201: IYKLGARRIA FFSLGPVGCV PARAMLPNAP TNKCFGKMNV MAKMYNKRLE DIVNIIPTKY PGAIAVFGAV YGITHRFQTY PARYGFSDVS NACCGNGTLG
301: GLMQCGREGY KICNNPNEFL FWDFYHPTEH TYRLMSKALW NGNKNHIRPF NLMALATNKI TF

Arabidopsis Description

GLIP6GLIP6 [Source:UniProtKB/TrEMBL;Acc:A0A178WCW6]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.