Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 2
- extracellular 2
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY25680 | Canola | extracellular, plasma membrane | 97.65 | 99.4 |
| Bra030918.1-P | Field mustard | plastid | 90.0 | 49.2 |
| CDY09515 | Canola | endoplasmic reticulum, extracellular, golgi | 29.41 | 38.17 |
| AT1G53920.1 | Thale cress | cytosol | 78.24 | 34.55 |
| CDY71922 | Canola | extracellular, plasma membrane | 41.18 | 31.53 |
| CDY54192 | Canola | extracellular | 22.94 | 29.1 |
| VIT_09s0002g00490.t01 | Wine grape | vacuole | 52.94 | 23.87 |
| KRH06261 | Soybean | extracellular, vacuole | 51.76 | 23.4 |
| Solyc12g049550.1.1 | Tomato | extracellular | 50.0 | 23.29 |
| PGSC0003DMT400074252 | Potato | extracellular | 50.0 | 23.04 |
| KRH47692 | Soybean | extracellular, vacuole | 49.41 | 22.34 |
| CDY02490 | Canola | extracellular, vacuole | 48.24 | 22.1 |
| CDY30674 | Canola | extracellular, vacuole | 47.06 | 21.51 |
| CDY36619 | Canola | endoplasmic reticulum, plasma membrane | 46.47 | 21.29 |
| CDX98433 | Canola | extracellular, vacuole | 46.47 | 21.12 |
| CDX97558 | Canola | extracellular | 45.88 | 20.86 |
| CDY24064 | Canola | plasma membrane | 44.71 | 20.21 |
| CDX98432 | Canola | extracellular | 37.06 | 16.89 |
| CDX97557 | Canola | extracellular | 37.06 | 16.89 |
| CDY36617 | Canola | plasma membrane | 34.12 | 16.76 |
| CDX75755 | Canola | plastid | 34.12 | 13.52 |
| CDY36628 | Canola | cytosol | 28.24 | 12.53 |
| CDY51411 | Canola | endoplasmic reticulum, extracellular, vacuole | 26.47 | 12.47 |
| CDX97555 | Canola | extracellular | 28.24 | 12.44 |
| CDY51412 | Canola | cytosol | 27.65 | 12.27 |
| CDY08211 | Canola | endoplasmic reticulum, vacuole | 27.65 | 12.21 |
| CDY30675 | Canola | endoplasmic reticulum, vacuole | 27.65 | 12.21 |
| CDY54588 | Canola | extracellular | 27.65 | 12.18 |
| CDY54197 | Canola | extracellular, vacuole | 28.24 | 12.15 |
| CDY54196 | Canola | extracellular | 27.65 | 12.08 |
| CDY36623 | Canola | endoplasmic reticulum | 27.06 | 12.01 |
| CDY61480 | Canola | extracellular, vacuole | 27.65 | 11.93 |
| CDX97556 | Canola | extracellular | 27.06 | 11.86 |
| CDY33240 | Canola | vacuole | 24.71 | 11.7 |
| CDX98428 | Canola | extracellular, plasma membrane, vacuole | 26.47 | 11.6 |
| CDY08213 | Canola | endoplasmic reticulum, extracellular, vacuole | 25.88 | 11.46 |
| CDY39106 | Canola | vacuole | 24.12 | 11.42 |
| CDY54591 | Canola | extracellular | 25.88 | 11.37 |
| CDY69208 | Canola | mitochondrion | 20.0 | 10.9 |
| CDY30680 | Canola | mitochondrion | 25.29 | 10.64 |
| CDY54194 | Canola | cytosol | 10.0 | 6.07 |
| CDY69407 | Canola | extracellular | 6.47 | 4.38 |
| CDY30676 | Canola | cytosol | 4.12 | 2.76 |
| CDY54198 | Canola | cytosol | 1.76 | 2.26 |
| CDY36625 | Canola | extracellular | 1.18 | 1.47 |
| CDY08214 | Canola | cytosol | 2.35 | 1.45 |
| CDY51410 | Canola | mitochondrion, plastid | 1.18 | 1.43 |
Protein Annotations
| EnsemblPlants:CDY02491 | EnsemblPlantsGene:GSBRNA2T00114131001 | Gene3D:3.40.50.1110 | GO:A0A078EMV5 | InterPro:IPR036514 | InterPro:SGNH_hydro_sf |
| PANTHER:PTHR22835 | PANTHER:PTHR22835:SF461 | ProteinID:CDY02491 | ProteinID:CDY02491.1 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI0004EEFE57 | MapMan:35.1 | : | : | : | : |
Description
BnaA08g00980D
Coordinates
chrLK031935:-:429862..430683
Molecular Weight (calculated)
18731.4 Da
IEP (calculated)
5.868
GRAVY (calculated)
0.179
Length
170 amino acids
Sequence
(BLAST)
(BLAST)
001: MRKSTLMEKV TQRTISSSSS TTFFLCFFIF SSSILFLAGK SAAKVSYDGD NDDNVTALFI FGDSFLDAGN NNYINTTTLD QANFPPYGQT FFGLPTGRFS
101: DGRLISDFIA EYAKLPLIPP FLEPGDSQKK LCGVNFASAG AGALVETFQG SVRILAFHLY FILKLFEIFK
101: DGRLISDFIA EYAKLPLIPP FLEPGDSQKK LCGVNFASAG AGALVETFQG SVRILAFHLY FILKLFEIFK
001: MRESTLMEKV TRRTISSFIF FIVSSTILFL AGKSSAKISH NGDNNVTALF LFGDSFLDAG NNNYINTTTL DQANFPPYGQ TFFGLPTGRF SDGRLISDFI
101: AEYANLPLIP PFLEPGNSQK KLYGVNFASA GAGALVETFQ GSVINLRTQL DHYKKVERLW RTNFGKEESK KRISRAVYLI SIGSNDYSSI FLTNQSLPIS
201: MSQHVDIVIG NLTTFIHEIY KIGGRKFGFL NVPDLGCFPA LRILQPKNDD SCLRDASRLA SMHNRALTNL LFQMQRQVKG FKFSLFDMNK SLRLRMQHPS
301: KFGFKEGEEA CCGTGKWRGV FSCGGKRIVK EYQLCENPKD YIFWDSLHLT QNTYNQFANL IWNGGHMSDS LVVGPYNINN LFQIP
101: AEYANLPLIP PFLEPGNSQK KLYGVNFASA GAGALVETFQ GSVINLRTQL DHYKKVERLW RTNFGKEESK KRISRAVYLI SIGSNDYSSI FLTNQSLPIS
201: MSQHVDIVIG NLTTFIHEIY KIGGRKFGFL NVPDLGCFPA LRILQPKNDD SCLRDASRLA SMHNRALTNL LFQMQRQVKG FKFSLFDMNK SLRLRMQHPS
301: KFGFKEGEEA CCGTGKWRGV FSCGGKRIVK EYQLCENPKD YIFWDSLHLT QNTYNQFANL IWNGGHMSDS LVVGPYNINN LFQIP
Arabidopsis Description
GLIP5GLIP5 [Source:UniProtKB/TrEMBL;Acc:A0A178WKF5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.