CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 7
endoplasmic reticulum 6
vacuole 5
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

cytosol: 16847873
cytosol: 19562800

msms PMID: 19562800 doi

P Jolivet, C Boulard, A Bellamy, C Larré, M Barre, H Rogniaux, S d'Andréa, T Chardot, N Nesi

NRA, UMR 206, Chimie Biologique, Thiverval-Grignon, France. jolivet@grignon.inra.fr

msms PMID: 16847873 doi

V Katavic, GK Agrawal, M Hajduch, SL Harris, JJ Thelen

University of Missouri-Columbia, Department of Biochemistry, Columbia 65211, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037957.1-P	Field mustard	extracellular	98.43	98.43
CDY51410	Canola	mitochondrion, plastid	34.99	95.71
CDY51412	Canola	cytosol	81.46	81.46
CDY36623	Canola	endoplasmic reticulum	79.37	79.37
AT1G54020.2	Thale cress	endoplasmic reticulum	71.28	73.39
CDY54194	Canola	cytosol	53.0	72.5
CDY08213	Canola	endoplasmic reticulum, extracellular, vacuole	66.84	66.67
CDY54198	Canola	cytosol	22.72	65.41
CDY54591	Canola	extracellular	65.01	64.34
CDY30676	Canola	cytosol	42.04	63.39
CDX97555	Canola	extracellular	63.71	63.21
CDY54192	Canola	extracellular	21.93	62.69
CDY54588	Canola	extracellular	62.92	62.44
CDX98428	Canola	extracellular, plasma membrane, vacuole	63.19	62.37
CDY08211	Canola	endoplasmic reticulum, vacuole	62.66	62.34
CDY30675	Canola	endoplasmic reticulum, vacuole	62.66	62.34
CDY54196	Canola	extracellular	62.4	61.44
CDX97556	Canola	extracellular	62.14	61.34
CDY33240	Canola	vacuole	41.25	44.01
CDY39106	Canola	vacuole	40.73	43.45
KRG97291	Soybean	extracellular	9.4	34.29
CDY61480	Canola	extracellular, vacuole	34.99	34.01
CDY54197	Canola	extracellular, vacuole	34.73	33.67
CDY09515	Canola	endoplasmic reticulum, extracellular, golgi	10.97	32.06
CDY51411	Canola	endoplasmic reticulum, extracellular, vacuole	30.03	31.86
CDY30680	Canola	mitochondrion	33.16	31.44
VIT_09s0002g00550.t01	Wine grape	extracellular	28.98	30.49
VIT_09s0002g00580.t01	Wine grape	endoplasmic reticulum, golgi	28.72	30.05
KRH07083	Soybean	extracellular	21.41	29.82
Solyc11g051060.1.1	Tomato	vacuole	27.94	29.72
VIT_09s0002g00570.t01	Wine grape	extracellular	28.72	29.65
KRH13794	Soybean	nucleus	28.46	29.54
CDX98432	Canola	extracellular	28.72	29.49
CDX97557	Canola	extracellular	28.72	29.49
PGSC0003DMT400016126	Potato	plasma membrane, vacuole	28.2	29.43
KRH69020	Soybean	extracellular	26.63	29.14
CDY36619	Canola	endoplasmic reticulum, plasma membrane	28.2	29.11
KRH13793	Soybean	nucleus	27.94	29.0
CDY08214	Canola	cytosol	20.89	28.99
CDY25680	Canola	extracellular, plasma membrane	12.53	28.74
KRH47690	Soybean	extracellular, vacuole	27.42	28.69
CDX98433	Canola	extracellular, vacuole	27.68	28.34
CDY02490	Canola	extracellular, vacuole	27.42	28.3
CDY02491	Canola	plastid	12.53	28.24
KRG94370	Soybean	extracellular	26.89	28.22
CDX97558	Canola	extracellular	27.15	27.81
CDY36617	Canola	plasma membrane	25.07	27.75
CDY24064	Canola	plasma membrane	27.15	27.66
Solyc06g065010.2.1	Tomato	nucleus	25.85	27.35
PGSC0003DMT400017106	Potato	extracellular	26.11	27.03
Solyc06g064960.2.1	Tomato	extracellular	25.59	26.78
KRG97292	Soybean	extracellular	25.59	26.78
Solyc11g051100.1.1	Tomato	cytosol, extracellular	4.96	26.76
CDY36625	Canola	extracellular	9.4	26.47
PGSC0003DMT400016123	Potato	cytosol	6.01	26.44
Solyc06g064980.2.1	Tomato	extracellular	26.37	26.37
CDY30674	Canola	extracellular, vacuole	25.59	26.34
Solyc01g109020.1.1	Tomato	extracellular	13.05	26.32
PGSC0003DMT400013272	Potato	extracellular, vacuole	25.07	26.16
PGSC0003DMT400080416	Potato	golgi, vacuole	24.54	25.97
PGSC0003DMT400074599	Potato	cytosol	21.93	25.38
Solyc06g064990.2.1	Tomato	extracellular	25.33	25.06
Solyc11g021040.1.1	Tomato	extracellular	13.32	24.4
CDY71922	Canola	extracellular, plasma membrane	14.1	24.32
Solyc04g028470.1.1	Tomato	cytosol	20.1	24.06
CDY69407	Canola	extracellular	15.67	23.9
CDY69208	Canola	mitochondrion	19.32	23.72
KRH06260	Soybean	cytosol, peroxisome	16.19	22.79
Solyc11g051120.1.1	Tomato	cytosol	8.36	22.07
Solyc06g064970.2.1	Tomato	extracellular, vacuole	20.37	21.79
CDX75755	Canola	plastid	19.84	17.72

Protein Annotations

EnsemblPlants:CDY36628	EnsemblPlantsGene:GSBRNA2T00062360001	Gene3D:3.40.50.1110	GO:A0A078HIJ4	GO:GO:0003674	GO:GO:0003824
GO:GO:0016787	GO:GO:0016788	InterPro:GDSL	InterPro:IPR036514	InterPro:SGNH_hydro_sf	InterPro:SGNH_plant_lipase_like
PANTHER:PTHR22835	PANTHER:PTHR22835:SF461	PFAM:PF00657	ProteinID:CDY36628	ProteinID:CDY36628.1	SignalP:SignalP-noTM
SUPFAM:SSF52266	TMHMM:TMhelix	UniParc:UPI0004EB5199	UniProt:A0A078HIJ4	MapMan:35.1	:

Description

BnaC06g06810DBnaC06g06810D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HIJ4]

Coordinates

chrLK032379:-:354013..355956

Molecular Weight (calculated)

43028.1 Da

IEP (calculated)

7.994

GRAVY (calculated)

-0.218

Length

383 amino acids

Sequence
(BLAST)

001: MACNCSLANV LGVVLVFTLF HDPITVAGQN IPAVALFTFG DSNFDAGNRM FLAGTRFPQN FWPYGKSRDD PSGKFSDGRI VPDFIAKFMG IPHDLPPAFE
101: PGANVSRGAS FAVDSASILG TARDSLNLNN QVRRFNQMIS NWKEDYITKS LFMISIGMED YYNFTKNNPT ADGSAQQAFV ISVISRLRNN IEMLYSSGAS
201: KFAVYTLPAL GCFPIVRQEF NTGNDCYEKL NDLAKQHNAR LGPMLNDLAR ARSGFQFTVF DFYNVILRRT QRNMNFRYSF TNVSCCGIGS HNAFGCGRPN
301: VRSKLCEYQR SYLFFDGRHN SEKAQEQFAH LLFGANPNVI QPMNIRELIT YPVNTNMSEF WEEPVGRNLM LVHEYDANAS ASM

Best Arabidopsis Sequence Match ( AT1G54020.2 )
(BLAST)

001: MECSSVSVLG ILLVFPLLHN LVTISGQNLP AVGLFTFGDS NFDAGNKKFL TSAPLPQNFW PYGKSRDDPK GKFSDGKIVP DFIAKFMGIP HDLPPALKPG
101: TDVSRGASFA VGSASILGSP KDSLALNQQV RKFNQMISNW KVDYIQKSVF MISIGMEDYY NFTKNNPNAE VSAQQAFVTS VTNRFKSDIN LLYSSGASKF
201: VVHLLAPLGC LPIARQEFKT GNNCYEKLND LAKQHNAKIG PILNEMAETK PDFQFTVFDF YNVILRRTQR NMNYRFSVTN ISCCGVGTHY AYGCGLPNVH
301: SKLCEYQRSY LYFDARHNTE KAQEAFAHLI FGADPNVIQP MNVRELMVYP VNEPMREFWE DPMDEKLSLV QY

Arabidopsis Description

GDSL esterase/lipase At1g54020 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5N8]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.