Skip to main content
crop-pal logo
Potato
Search for another protein from :
Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • cytosol 2
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, plastid, secretory
BaCelLo:secretory
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400013272
PGSC0003DMT400016123
PGSC0003DMT400016126
PGSC0003DMT400017106
PGSC0003DMT400074599
PGSC0003DMT400075691
PGSC0003DMT400080416

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G54010.1 PGSC0003DMT400075691 AT2G01950.1 19000166
AT1G54030.1 PGSC0003DMT400013272 AT1G54000.1 23155454
AT1G54030.1 PGSC0003DMT400016123 AT1G54000.1 23155454
AT1G54030.1 PGSC0003DMT400016126 AT1G54000.1 23155454
AT1G54030.1 PGSC0003DMT400017106 AT1G54000.1 23155454
AT1G54030.1 PGSC0003DMT400074599 AT1G54000.1 23155454
AT1G54030.1 PGSC0003DMT400080416 AT1G54000.1 23155454
AT1G54030.1 PGSC0003DMT400013272 AT1G54010.1 23155454
AT1G54030.1 PGSC0003DMT400016123 AT1G54010.1 23155454
AT1G54030.1 PGSC0003DMT400016126 AT1G54010.1 23155454
AT1G54030.1 PGSC0003DMT400017106 AT1G54010.1 23155454
AT1G54030.1 PGSC0003DMT400074599 AT1G54010.1 23155454
AT1G54030.1 PGSC0003DMT400080416 AT1G54010.1 23155454
AT1G54030.1 PGSC0003DMT400013272 AT1G54020.2 23155454
AT1G54030.1 PGSC0003DMT400016123 AT1G54020.2 23155454
AT1G54030.1 PGSC0003DMT400016126 AT1G54020.2 23155454
AT1G54030.1 PGSC0003DMT400017106 AT1G54020.2 23155454
AT1G54030.1 PGSC0003DMT400074599 AT1G54020.2 23155454
AT1G54030.1 PGSC0003DMT400080416 AT1G54020.2 23155454
AT1G54030.1 PGSC0003DMT400013272 AT3G14210.1 23155454
AT1G54030.1 PGSC0003DMT400016123 AT3G14210.1 23155454
AT1G54030.1 PGSC0003DMT400016126 AT3G14210.1 23155454
AT1G54030.1 PGSC0003DMT400017106 AT3G14210.1 23155454
AT1G54030.1 PGSC0003DMT400074599 AT3G14210.1 23155454
AT1G54030.1 PGSC0003DMT400080416 AT3G14210.1 23155454
AT3G14220.1 PGSC0003DMT400075691 AT2G01950.1 19000166
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc11g051100.1.1 Tomato cytosol, extracellular 33.33 40.85
CDY69407 Canola extracellular 47.13 16.33
CDY51410 Canola mitochondrion, plastid 25.29 15.71
PGSC0003DMT400017106 Potato extracellular 63.22 14.86
PGSC0003DMT400013272 Potato extracellular, vacuole 60.92 14.44
PGSC0003DMT400016126 Potato plasma membrane, vacuole 60.92 14.44
KRH06260 Soybean cytosol, peroxisome 43.68 13.97
PGSC0003DMT400080416 Potato golgi, vacuole 57.47 13.81
VIT_09s0002g00500.t01 Wine grape cytosol 44.83 13.4
CDY36625 Canola extracellular 20.69 13.24
CDY69208 Canola mitochondrion 45.98 12.82
CDY54198 Canola cytosol 19.54 12.78
Bra039701.1-P Field mustard extracellular, plasma membrane 44.83 12.15
CDY36617 Canola plasma membrane 47.13 11.85
VIT_09s0002g00510.t01 Wine grape extracellular 49.43 11.65
KRH07083 Soybean extracellular 36.78 11.64
VIT_09s0002g00530.t01 Wine grape cytosol 45.98 11.63
CDY02490 Canola extracellular, vacuole 49.43 11.59
Bra030917.1-P Field mustard extracellular, vacuole 49.43 11.59
Bra030916.1-P Field mustard plastid 47.13 11.29
KRG94370 Soybean extracellular 47.13 11.23
CDY08214 Canola cytosol 35.63 11.23
VIT_09s0002g00540.t01 Wine grape extracellular 49.43 10.91
AT1G53940.2 Thale cress plasma membrane 47.13 10.9
AT1G53990.1 Thale cress extracellular, plasma membrane 45.98 10.9
AT3G14225.1 Thale cress endoplasmic reticulum, plasma membrane, vacuole 47.13 10.88
KRH69020 Soybean extracellular 43.68 10.86
KRG97292 Soybean extracellular 44.83 10.66
CDY24064 Canola plasma membrane 45.98 10.64
CDY36619 Canola endoplasmic reticulum, plasma membrane 44.83 10.51
AT5G40990.1 Thale cress plasma membrane 44.83 10.43
KRH13794 Soybean nucleus 43.68 10.3
PGSC0003DMT400074599 Potato cytosol 39.08 10.27
Bra027357.1-P Field mustard extracellular 43.68 10.19
CDX97557 Canola extracellular 43.68 10.19
CDX98432 Canola extracellular 43.68 10.19
KRH47690 Soybean extracellular, vacuole 42.53 10.11
CDX98433 Canola extracellular, vacuole 42.53 9.89
CDX97558 Canola extracellular 42.53 9.89
Bra027356.1-P Field mustard extracellular 42.53 9.89
KRH13793 Soybean nucleus 41.38 9.76
PGSC0003DMT400074252 Potato extracellular 41.38 9.76
Bra014375.1-P Field mustard extracellular, vacuole 41.38 9.68
VIT_09s0002g00580.t01 Wine grape endoplasmic reticulum, golgi 40.23 9.56
CDY30676 Canola cytosol 27.59 9.45
VIT_09s0002g00570.t01 Wine grape extracellular 40.23 9.43
CDY30674 Canola extracellular, vacuole 40.23 9.41
VIT_09s0002g00550.t01 Wine grape extracellular 39.08 9.34
CDY61480 Canola extracellular, vacuole 36.78 8.12
Bra030911.1-P Field mustard extracellular, vacuole 36.78 8.1
CDY54197 Canola extracellular, vacuole 36.78 8.1
Bra014371.1-P Field mustard endoplasmic reticulum, extracellular, vacuole 35.63 7.97
CDY30680 Canola mitochondrion 36.78 7.92
Bra037955.1-P Field mustard endoplasmic reticulum, extracellular, vacuole 35.63 7.87
CDY39106 Canola vacuole 32.18 7.8
Bra021542.1-P Field mustard vacuole 32.18 7.8
AT3G14220.1 Thale cress vacuole 32.18 7.71
CDY33240 Canola vacuole 31.03 7.52
CDY54194 Canola cytosol 24.14 7.5
Bra030913.1-P Field mustard cytosol 24.14 7.5
VIT_09s0002g00520.t01 Wine grape extracellular 26.44 7.21
AT1G54030.1 Thale cress endoplasmic reticulum, nucleus, vacuole 33.33 6.95
PGSC0003DMT400096676 Potato mitochondrion 31.03 6.4
Bra027359.1-P Field mustard extracellular 27.59 6.38
AT3G14210.1 Thale cress extracellular, golgi 28.74 6.38
CDY51412 Canola cytosol 27.59 6.27
CDY36623 Canola endoplasmic reticulum 27.59 6.27
Bra037954.1-P Field mustard endoplasmic reticulum, extracellular, golgi 27.59 6.27
CDX97555 Canola extracellular 27.59 6.22
Bra027358.1-P Field mustard extracellular 27.59 6.19
CDX97556 Canola extracellular 27.59 6.19
AT1G54020.2 Thale cress endoplasmic reticulum 26.44 6.18
AT1G54000.1 Thale cress endoplasmic reticulum, extracellular, vacuole 27.59 6.14
CDY36628 Canola cytosol 26.44 6.01
Bra037957.1-P Field mustard extracellular 26.44 6.01
CDY08213 Canola endoplasmic reticulum, extracellular, vacuole 26.44 5.99
Bra014372.1-P Field mustard extracellular 26.44 5.99
Bra030915.1-P Field mustard extracellular 26.44 5.96
CDY54591 Canola extracellular 26.44 5.94
CDX98428 Canola extracellular, plasma membrane, vacuole 26.44 5.93
CDY08211 Canola endoplasmic reticulum, vacuole 25.29 5.71
Bra014374.1-P Field mustard endoplasmic reticulum, vacuole 25.29 5.71
CDY30675 Canola endoplasmic reticulum, vacuole 25.29 5.71
AT1G54010.1 Thale cress extracellular 25.29 5.7
CDY51411 Canola endoplasmic reticulum, extracellular, vacuole 22.99 5.54
CDY54588 Canola extracellular 24.14 5.44
CDY54196 Canola extracellular 24.14 5.4
Bra030912.1-P Field mustard extracellular 24.14 4.72
CDX75755 Canola plastid 21.84 4.43
KRG97291 Soybean extracellular 4.6 3.81
CDY71922 Canola extracellular, plasma membrane 4.6 1.8
CDY54192 Canola extracellular 0.0 0.0
AT1G53970.2 Thale cress cytosol 0.0 0.0
Protein Annotations
EnsemblPlants:PGSC0003DMT400016123EnsemblPlantsGene:PGSC0003DMG400006302PANTHER:PTHR22835PANTHER:PTHR22835:SF262PGSC:PGSC0003DMG400006302UniParc:UPI000294D48E
UniProt:M1A752MapMan:35.1::::
Description
Lipase SIL1 [Source:PGSC_GENE;Acc:PGSC0003DMG400006302]
Coordinates
chr11:-:15356890..15357321
Molecular Weight (calculated)
9759.6 Da
IEP (calculated)
8.759
GRAVY (calculated)
-0.539
Length
87 amino acids
Sequence
(BLAST)
1: MDFHVCVGFE VSKKACCGTG PFRGINSCGG KRQVKEYQLC KNPKDYVFFD ASHPSQSTYQ QSAKLLWHGD PHVTKPHGLK SFFEFSG
Best Arabidopsis Sequence Match ( AT1G53920.1 )
(BLAST)
001: MRESTLMEKV TRRTISSFIF FIVSSTILFL AGKSSAKISH NGDNNVTALF LFGDSFLDAG NNNYINTTTL DQANFPPYGQ TFFGLPTGRF SDGRLISDFI
101: AEYANLPLIP PFLEPGNSQK KLYGVNFASA GAGALVETFQ GSVINLRTQL DHYKKVERLW RTNFGKEESK KRISRAVYLI SIGSNDYSSI FLTNQSLPIS
201: MSQHVDIVIG NLTTFIHEIY KIGGRKFGFL NVPDLGCFPA LRILQPKNDD SCLRDASRLA SMHNRALTNL LFQMQRQVKG FKFSLFDMNK SLRLRMQHPS
301: KFGFKEGEEA CCGTGKWRGV FSCGGKRIVK EYQLCENPKD YIFWDSLHLT QNTYNQFANL IWNGGHMSDS LVVGPYNINN LFQIP
Arabidopsis Description
GLIP5GLIP5 [Source:UniProtKB/TrEMBL;Acc:A0A178WKF5]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.