Factsheet for PGSC0003DMT400096676

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 3
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	extracellular
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g007570.1.1	Tomato	extracellular, plasma membrane, vacuole	72.75	84.11
VIT_01s0011g04540.t01	Wine grape	extracellular	54.5	64.07
Bra007962.1-P	Field mustard	extracellular, vacuole	50.47	60.17
AT1G71120.1	Thale cress	endoplasmic reticulum	51.18	59.67
CDY09515	Canola	endoplasmic reticulum, extracellular, golgi	15.88	51.15
PGSC0003DMT400016123	Potato	cytosol	6.4	31.03
PGSC0003DMT400016126	Potato	plasma membrane, vacuole	23.46	26.98
PGSC0003DMT400080416	Potato	golgi, vacuole	22.75	26.52
PGSC0003DMT400074252	Potato	extracellular	22.99	26.29
PGSC0003DMT400074599	Potato	cytosol	20.62	26.28
PGSC0003DMT400013272	Potato	extracellular, vacuole	22.51	25.89
PGSC0003DMT400017106	Potato	extracellular	21.56	24.59

Protein Annotations

EnsemblPlants:PGSC0003DMT400096676	EnsemblPlantsGene:PGSC0003DMG400046247	Gene3D:3.40.50.1110	GO:GO:0003674	GO:GO:0003824	GO:GO:0016787
GO:GO:0016788	InterPro:GDSL	InterPro:IPR036514	InterPro:SGNH_hydro_sf	InterPro:SGNH_plant_lipase_like	PANTHER:PTHR22835
PANTHER:PTHR22835:SF187	PFAM:PF00657	PGSC:PGSC0003DMG400046247	SUPFAM:SSF52266	UniParc:UPI000296EB69	UniProt:M1DZ02
MapMan:35.1	:	:	:	:	:

Description

Zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400046247]

Coordinates

chr4:+:1987646..1993427

Molecular Weight (calculated)

46658.4 Da

IEP (calculated)

9.419

GRAVY (calculated)

-0.133

Length

422 amino acids

Sequence
(BLAST)

001: MSKFVDQICK LGARRIALIS LGPVGCIPAR ALLPSAPIDK CYGKMNRMVK NYNVGLENLV KRIPIKYPSS FAVYGAVYKT VQNFRANPQS YGFSDVTNAC
101: CGDGTLGGAL QCAQADFPPY GSNFFHHPTG RFTNGRTVAD FISQFIGIPL QRPFLEAQLE LVNGSRKEYP SNGINFASAG SGVLSTTNQD LGVTQIQDQI
201: QQFKTLVQQN HITKKQIQQS LFFFESGSND IFSYFYPFDA PTLTPDAYVQ AMLAQGTNFV DQICKLGARR IALFSLGPVG CVPARTLLPG APIDKCYGKM
301: NKMVKNYNMG LESLVKIIPT KYPGSFAVFG DVYKIVQIFK ANPKRYDATN ACCGDGTLGG LLQCGKEGYK ICAKPNEYLF WDYFHPSEHT YNLISKALWN
401: GIHTRIRPIN LKTLANMTLT QH

Best Arabidopsis Sequence Match ( AT1G71120.1 )
(BLAST)

001: MSSSSSMDLL MCLLLLISPV VLAKSSSTVP AIFTFGDSIF DAGNNHYNKN CTAQADFPPY GSSFFHRPTG RFTNGRTVAD FISEFVGLPL QKPFLELQIQ
101: ILNGTSNFSN GINFASAGSG LLLDTNKFMG VTPIQTQLQQ FQTLVEQNLI EKSIIQESLF LLETGSNDIF NYFLPFRAPT LSPDAYVNAM LDQVNKTIDQ
201: IYKLGARRIA FFSLGPVGCV PARAMLPNAP TNKCFGKMNV MAKMYNKRLE DIVNIIPTKY PGAIAVFGAV YGITHRFQTY PARYGFSDVS NACCGNGTLG
301: GLMQCGREGY KICNNPNEFL FWDFYHPTEH TYRLMSKALW NGNKNHIRPF NLMALATNKI TF

Arabidopsis Description

GLIP6GLIP6 [Source:UniProtKB/TrEMBL;Acc:A0A178WCW6]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.