Factsheet for VIT_01s0011g04540.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 9
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY09515	Canola	endoplasmic reticulum, extracellular, golgi	26.74	73.28
Solyc04g007570.1.1	Tomato	extracellular, plasma membrane, vacuole	71.31	70.14
Bra007962.1-P	Field mustard	extracellular, vacuole	66.02	66.95
AT1G71120.1	Thale cress	endoplasmic reticulum	66.57	66.02
PGSC0003DMT400096676	Potato	mitochondrion	64.07	54.5
VIT_09s0002g00530.t01	Wine grape	cytosol	29.53	30.81
VIT_09s0002g00490.t01	Wine grape	vacuole	31.2	29.71
VIT_09s0002g00580.t01	Wine grape	endoplasmic reticulum, golgi	29.8	29.23
VIT_09s0002g00510.t01	Wine grape	extracellular	29.8	29.0
VIT_11s0016g00430.t01	Wine grape	extracellular	31.48	28.9
VIT_09s0002g00550.t01	Wine grape	extracellular	29.25	28.85
VIT_09s0002g00570.t01	Wine grape	extracellular	28.13	27.22
VIT_09s0002g00540.t01	Wine grape	extracellular	29.53	26.9
VIT_09s0002g00500.t01	Wine grape	cytosol	21.17	26.12
VIT_09s0002g00520.t01	Wine grape	extracellular	22.28	25.08

Protein Annotations

EntrezGene:100267979	wikigene:100267979	Gene3D:3.40.50.1110	MapMan:35.1	ProteinID:CBI26933	ProteinID:CBI26933.3
UniProt:D7T8W2	EMBL:FN595752	InterPro:GDSL	GO:GO:0003674	GO:GO:0003824	GO:GO:0016787
GO:GO:0016788	InterPro:IPR036514	EntrezGene:LOC100267979	wikigene:LOC100267979	PFAM:PF00657	PANTHER:PTHR22835
PANTHER:PTHR22835:SF187	InterPro:SGNH_hydro_sf	InterPro:SGNH_plant_lipase_like	SUPFAM:SSF52266	SignalP:SignalP-noTM	TIGR:TC60710
UniParc:UPI00015C8431	ArrayExpress:VIT_01s0011g04540	EnsemblPlantsGene:VIT_01s0011g04540	EnsemblPlants:VIT_01s0011g04540.t01	unigene:Vvi.24666	RefSeq:XP_002284004
RefSeq:XP_002284004.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1:+:4113895..4115778

Molecular Weight (calculated)

39915.1 Da

IEP (calculated)

7.795

GRAVY (calculated)

-0.023

Length

359 amino acids

Sequence
(BLAST)

001: MEKVLLLLLL SLASSPSVFS FNVPAIFTFG DSIFDAGNNH FLKNCTAQAD FPPYGSSFFH HPTGRFTNGR TVADFISQFI GLDLQKPYLQ AQIEVVNGTQ
101: KNYPSNGINF ASAGSGVLRE TNKDMGVIPI QDQLQQFQTL VQQNQIDSKL VQQSLFFLES GSNDVFNYFL PFVTPTLDPD AYMQVMLTEV VHYLDTIYKL
201: GARRIAVFAL GPVGCVPARS LLPGAPTDRC FGKMNHMVKQ YNLGLESLVK DIPIKYPGAV GIYGAVYDIV QRLRAIPKHY GFSDVSNACC GDGILRGMLQ
301: CGQEGYKICP NPYEYLFWDY FHPSEHTYKL ISKGLWGGKQ SQVRPINLRT LANLTLSSV

Best Arabidopsis Sequence Match ( AT1G71120.1 )
(BLAST)

001: MSSSSSMDLL MCLLLLISPV VLAKSSSTVP AIFTFGDSIF DAGNNHYNKN CTAQADFPPY GSSFFHRPTG RFTNGRTVAD FISEFVGLPL QKPFLELQIQ
101: ILNGTSNFSN GINFASAGSG LLLDTNKFMG VTPIQTQLQQ FQTLVEQNLI EKSIIQESLF LLETGSNDIF NYFLPFRAPT LSPDAYVNAM LDQVNKTIDQ
201: IYKLGARRIA FFSLGPVGCV PARAMLPNAP TNKCFGKMNV MAKMYNKRLE DIVNIIPTKY PGAIAVFGAV YGITHRFQTY PARYGFSDVS NACCGNGTLG
301: GLMQCGREGY KICNNPNEFL FWDFYHPTEH TYRLMSKALW NGNKNHIRPF NLMALATNKI TF

Arabidopsis Description

GLIP6GLIP6 [Source:UniProtKB/TrEMBL;Acc:A0A178WCW6]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.