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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 10
  • extracellular 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:extracellular, plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:extracellular
iPSORT:plastid
MultiLoc:plastid
Plant-mPloc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
 plastid: 20363867
plastid: 22908117
plastid: 28183294
extracellular: 29876421
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID: 20363867 doi
C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID: 28183294 doi
R Tamburino, M Vitale, A Ruggiero, M Sassi, L Sannino, S Arena, A Costa, G Batelli, N Zambrano, A Scaloni, S Grillo, N Scotti
Center of Genetics Engineering (CEINGE) Biotecnologie Avanzate S.c. a R.l, via Pansini, 80100, Napoli, Italy., Department of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, via Pansini, 80100, Napoli, Italy., Institute for the Animal Production System in the Mediterranean Environment, National Research Council of Italy (CNR-ISPAAM), via Argine 1085, 80147, Napoli, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy. nscotti@unina.it.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400078780 Potato plastid 96.66 96.66
KRH17371 Soybean cytosol 58.1 86.26
VIT_14s0006g01410.t01 Wine grape plastid 80.98 82.03
KRH73007 Soybean plastid 79.43 80.68
AT1G66430.1 Thale cress plastid 78.15 79.17
CDY55675 Canola plastid 77.89 78.09
GSMUA_Achr5P05850_001 Banana plastid 77.89 77.89
Bra004168.1-P Field mustard plastid 77.12 77.32
CDX96146 Canola plastid 77.12 77.12
EER88127 Sorghum plastid 72.24 72.42
Zm00001d044813_P001 Maize plastid 70.44 70.62
TraesCS7A01G190500.1 Wheat plastid 68.89 69.79
TraesCS7B01G095400.1 Wheat plastid 68.89 69.79
TraesCS7D01G191500.1 Wheat plastid 68.64 69.53
Os06t0232200-00 Rice plastid 70.95 69.52
Solyc03g006860.2.1 Tomato cytosol 60.41 67.72
Solyc10g017620.2.1 Tomato plastid 64.01 66.4
Solyc11g042850.1.1 Tomato unclear 53.21 63.69
Solyc06g073190.2.1 Tomato extracellular 53.21 63.11
HORVU7Hr1G038710.2 Barley cytosol, plastid 68.12 59.68
Solyc09g011850.2.1 Tomato nucleus 30.59 24.9
Solyc05g012100.2.1 Tomato nucleus 28.79 17.36
Protein Annotations
MapMan:3.1.4.4Gene3D:3.40.1190.20InterPro:Carboh/pur_kinase_PfkB_CSGO:GO:0003674GO:GO:0003824GO:GO:0008150
GO:GO:0008152GO:GO:0009987GO:GO:0016301GO:GO:0016310GO:GO:0016740GO:GO:0016773
InterPro:IPR029056UniProt:K4BCU7PFAM:PF00294PRINTS:PR00990ScanProsite:PS00583ScanProsite:PS00584
PANTHER:PTHR43085PANTHER:PTHR43085:SF8InterPro:PfkB_domInterPro:Ribo/fructo_kinaseInterPro:Ribokinase-likeSUPFAM:SSF53613
EnsemblPlantsGene:Solyc02g091490.2EnsemblPlants:Solyc02g091490.2.1UniParc:UPI000276799FSEG:seg::
Description
No Description!
Coordinates
chr2:-:52766520..52771329
Molecular Weight (calculated)
41833.1 Da
IEP (calculated)
5.516
GRAVY (calculated)
-0.016
Length
389 amino acids
Sequence
(BLAST)
001: MALHATAFSF TGVSTSSKSS RSALLSVFPL PRRCTVKATS QYPHSFPRCK IQGRALPSDN GLVEKDESSL VVCFGEMLID FVPTTSGLSL AEAPAFKKAP
101: GGAPANVAVG ISRLGGSSAF IGKVGEDEFG YMLAEILKEN NVNSDGMRFD PGARTALAFV TLRKDGEREF MFYRNPSADM LLQEDELDLE LIRKAKVFHY
201: GSISLITEPC KSAHIAAAKA AKDAGVILSY DPNLRLPLWP SAESAREGIL SIWNTADIIK ISEEEISFLT QGEDPYDDNV VRKLYHPNLK LLLVTEGPEG
301: CRYYTKDFSG RVKGIKVDAV DTTGAGDAFV AGILSQLASD VSLLQDEGKL RDALSFANAC GALTVMERGA IPALPTKEVV LNALLKSVA
Best Arabidopsis Sequence Match ( AT1G66430.1 )
(BLAST)
001: MALQATTTTF CFSGPTFRST PHSLTSKRPI SIKATTSSPS RLSNSRSNLK GRALSSDGST QESPYVVCFG EMLIDFVPTT SGLSLADAPA FKKAPGGAPA
101: NVAVGIARLG GSSAFIGKVG EDEFGYMLAN ILKDNNVNND GMRFDPGART ALAFVTLTNE GEREFMFYRN PSADMLLEES ELDFDLIKKA KIFHYGSISL
201: ITEPCKSAHI SAAKAAKEAG VILSYDPNLR LPLWPSADNA REEILSIWET ADIIKISEEE IVFLTKGEDP YDDNVVRKLF HPKLKLLLVT EGPEGCRYYT
301: KDFSGRVHGL KVDVVDTTGA GDAFVAGILS QLANDLSLLQ DEERLREALM FANACGALTV KVRGAIPALP TKEAVHEALL KAVV
Arabidopsis Description
Probable fructokinase-6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C524]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.