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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • cytosol 3
  • extracellular 5
  • endoplasmic reticulum 3
  • vacuole 3
  • plasma membrane 3
  • golgi 3
  • mitochondrion 1
  • plastid 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:cytosol
EpiLoc:extracellular
iPSORT:secretory
MultiLoc:cytosol
Plant-mPloc:cytosol, mitochondrion, plastid
PProwler:secretory
TargetP:secretory
WoLF PSORT:extracellular
YLoc:peroxisome
 extracellular: 20496099
extracellular: 22364583
extracellular: 22892874
unclear: 26455813
extracellular: 26583031
nucleus: 28394025
extracellular: 29876421
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 20496099 doi
D Dahal, A Pich, HP Braun, K Wydra
Institute for Plant Diseases and Plant Protection, Faculty of Natural Sciences, Leibniz Universität Hannover, Herrenhäuser Str.2, 30419 Hannover, Germany. dahal@ipp.uni-hannover.de
msms PMID: 22892874 doi
EH Konozy, H Rogniaux, M Causse, M Faurobert
Unité de Génétique et Amélioration des Fruits et Légumes, INRA, BP 94, 84143 Montfavet, France. ehkonozy@yahoo.com
msms PMID: 26583031 doi
F Gawehns, L Ma, O Bruning, PM Houterman, S Boeren, BJ Cornelissen, M Rep, FL Takken
Laboratory of Biochemistry, Wageningen University Wageningen, Netherlands., Molecular Plant Pathology, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands., RNA Biology and Applied Bioinformatics Research Group and MAD: Dutch Genomics Service and Support Provider, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands.
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
msms PMID: 22364583 doi
P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez
Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400069198 Potato extracellular 95.43 95.14
CDX98377 Canola cytosol 84.45 84.97
CDX67798 Canola cytosol 83.54 84.05
KRH23212 Soybean endoplasmic reticulum 84.76 83.99
VIT_05s0102g00710.t01 Wine grape cytosol, extracellular, plasma membrane 84.45 83.94
CDY00619 Canola cytosol 82.93 83.44
AT3G59480.1 Thale cress cytosol 82.93 83.44
Bra003378.1-P Field mustard cytosol 82.93 83.44
Bra007452.1-P Field mustard cytosol 82.93 83.44
Bra014540.1-P Field mustard cytosol 82.93 83.44
CDX89022 Canola cytosol 82.93 83.44
KRH10125 Soybean endoplasmic reticulum, nucleus 83.84 83.33
CDY15383 Canola cytosol 82.62 83.13
CDY06000 Canola cytosol 82.62 83.13
KRH29617 Soybean endoplasmic reticulum 83.84 83.08
CDX71907 Canola cytosol 82.32 82.82
Bra018248.1-P Field mustard cytosol 82.01 82.77
CDY10801 Canola cytosol 82.01 82.77
CDY56614 Canola cytosol 81.71 82.46
AT2G31390.1 Thale cress cytosol 81.71 82.46
CDX84788 Canola cytosol 81.4 82.15
CDY23944 Canola cytosol 81.4 82.15
Bra022839.1-P Field mustard cytosol 81.1 81.85
AT1G06030.1 Thale cress cytosol 81.1 80.85
CDY19092 Canola plastid, vacuole 83.23 80.77
Bra015468.1-P Field mustard cytosol 72.56 80.41
KRH24618 Soybean cytosol, peroxisome, plastid 84.45 79.83
GSMUA_Achr11P... Banana cytosol 78.96 79.2
GSMUA_Achr11P... Banana cytosol 78.66 78.42
GSMUA_Achr10P... Banana cytosol 76.22 77.88
GSMUA_Achr4P16250_001 Banana cytosol 73.48 77.74
AT1G06020.1 Thale cress cytosol 81.4 77.39
GSMUA_Achr11P... Banana cytosol 78.05 76.88
Bra030634.1-P Field mustard cytosol 80.79 76.37
CDX86540 Canola cytosol 80.18 76.23
AT1G50390.1 Thale cress cytosol 33.54 75.34
GSMUA_AchrUn_... Banana cytosol 73.48 73.48
Zm00001d042536_P001 Maize cytosol 63.41 73.24
Zm00001d012173_P001 Maize plasma membrane 71.04 72.14
GSMUA_Achr6P12500_001 Banana cytosol 45.43 71.98
EES04029 Sorghum cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 70.73 71.83
CDY10167 Canola endoplasmic reticulum, golgi 80.18 71.66
CDY47709 Canola endoplasmic reticulum, golgi 72.87 70.71
Os01t0894300-01 Rice cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 69.51 70.59
TraesCS3B01G433000.1 Wheat golgi 69.21 70.28
TraesCS3D01G394200.1 Wheat cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 68.9 69.97
TraesCS3A01G400000.1 Wheat cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 68.9 69.97
TraesCS5D01G293800.1 Wheat cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 67.38 68.42
TraesCS5B01G285500.1 Wheat cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 67.07 68.11
TraesCS5A01G286200.1 Wheat cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 67.07 68.11
Solyc11g042850.1.1 Tomato unclear 66.77 67.38
CDY09993 Canola cytosol 21.34 67.31
Bra032442.1-P Field mustard cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole 23.78 66.67
CDY15557 Canola cytosol 32.62 65.24
CDX71905 Canola mitochondrion 18.29 65.22
HORVU5Hr1G076230.5 Barley plastid 67.07 61.45
CDY05997 Canola cytosol, mitochondrion 24.7 60.45
Solyc03g006860.2.1 Tomato cytosol 59.45 56.2
Solyc10g017620.2.1 Tomato plastid 63.72 55.73
Solyc02g091490.2.1 Tomato plastid 63.11 53.21
Solyc09g011850.2.1 Tomato nucleus 36.59 25.1
Solyc05g012100.2.1 Tomato nucleus 32.62 16.59
Protein Annotations
MapMan:3.1.4.4Gene3D:3.40.1190.20InterPro:Carboh/pur_kinase_PfkB_CSGO:GO:0000166GO:GO:0003674GO:GO:0003824
GO:GO:0005488GO:GO:0005524GO:GO:0005975GO:GO:0008150GO:GO:0008152GO:GO:0008865
GO:GO:0009058GO:GO:0009987GO:GO:0016301GO:GO:0016310GO:GO:0016740GO:GO:0016773
GO:GO:0019252GO:GO:0046835InterPro:IPR029056PFAM:PF00294PRINTS:PR00990ScanProsite:PS00583
ScanProsite:PS00584PANTHER:PTHR43085PANTHER:PTHR43085:SF6InterPro:PfkB_domUniProt:Q42896InterPro:Ribo/fructo_kinase
InterPro:Ribokinase-likeSUPFAM:SSF53613EnsemblPlantsGene:Solyc06g073190.2EnsemblPlants:Solyc06g073190.2.1EMBL:U62329EMBL:U64818
UniParc:UPI00000A4333:::::
Description
FRK2Fructokinase-2 [Source:UniProtKB/Swiss-Prot;Acc:Q42896]
Coordinates
chr6:-:45093319..45096091
Molecular Weight (calculated)
34765.0 Da
IEP (calculated)
5.982
GRAVY (calculated)
0.133
Length
328 amino acids
Sequence
(BLAST)
001: MAVNGASSSG LIVSFGEMLI DFVPTVSGVS LAEAPGFLKA PGGAPANVAI AVTRLGGKSA FVGKLGDDEF GHMLAGILKT NGVQAEGINF DKGARTALAF
101: VTLRADGERE FMFYRNPSAD MLLTPAELNL DLIRSAKVFH YGSISLIVEP CRAAHMKAME VAKEAGALLS YDPNLRLPLW PSAEEAKKQI KSIWDSADVI
201: KVSDVELEFL TGSNKIDDES AMSLWHPNLK LLLVTLGEKG CNYYTKKFHG TVGGFHVKTV DTTGAGDSFV GALLTKIVDD QTILEDEARL KEVLRFSCAC
301: GAITTTKKGA IPALPTASEA LTLLKGGA
Best Arabidopsis Sequence Match ( AT3G59480.1 )
(BLAST)
001: MAASNGEKSL IVSFGEMLID FVPTVSGVSL ADAPGFIKAP GGAPANVAIA ISRLGGRAAF VGKLGDDEFG HMLAGILKQN GVSAEGINFD TGARTALAFV
101: TLRSDGEREF MFYRNPSADM LLRPDELNLD VIRSAKVFHY GSISLIVEPC RSAHLKAMEV AKEAGALLSY DPNLRLPLWP SKEEAQKQIL SIWDKAEVIK
201: VSDEELMFLT GSDKVDDETA LSLWHSNLKL LLVTLGEKGC RYYTKSFRGS VDPFHVDAVD TTGAGDSFVG ALLCKIVDDR AVLEDEARLR EVLRLANACG
301: AITTTKKGAI PALPTESEVQ SLLKGN
Arabidopsis Description
Probable fructokinase-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1B9]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.