CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 4
plastid 4
plasma membrane 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24618	Soybean	cytosol, peroxisome, plastid	96.68	92.22
KRH10125	Soybean	endoplasmic reticulum, nucleus	90.03	90.3
KRH23212	Soybean	endoplasmic reticulum	89.43	89.43
VIT_05s0102g00710.t01	Wine grape	cytosol, extracellular, plasma membrane	85.8	86.06
Solyc06g073190.2.1	Tomato	extracellular	83.08	83.84
PGSC0003DMT400069198	Potato	extracellular	83.08	83.59
CDX89022	Canola	cytosol	80.97	82.21
AT3G59480.1	Thale cress	cytosol	80.97	82.21
Bra014540.1-P	Field mustard	cytosol	80.97	82.21
CDX98377	Canola	cytosol	80.66	81.9
CDX67798	Canola	cytosol	80.66	81.9
CDY06000	Canola	cytosol	80.36	81.6
CDY00619	Canola	cytosol	80.36	81.6
AT1G06030.1	Thale cress	cytosol	80.97	81.46
Bra007452.1-P	Field mustard	cytosol	80.06	81.29
Bra003378.1-P	Field mustard	cytosol	80.06	81.29
CDX71907	Canola	cytosol	80.06	81.29
CDY10801	Canola	cytosol	79.76	81.23
CDY23944	Canola	cytosol	79.76	81.23
CDX84788	Canola	cytosol	79.76	81.23
Bra018248.1-P	Field mustard	cytosol	79.76	81.23
AT2G31390.1	Thale cress	cytosol	79.76	81.23
Bra022839.1-P	Field mustard	cytosol	79.46	80.92
CDY56614	Canola	cytosol	79.46	80.92
CDY15383	Canola	cytosol	79.46	80.67
Bra015468.1-P	Field mustard	cytosol	71.3	79.73
CDY19092	Canola	plastid, vacuole	80.06	78.4
GSMUA_Achr4P16250_001	Banana	cytosol	73.41	78.39
GSMUA_Achr10P...	Banana	cytosol	75.53	77.88
AT1G06020.1	Thale cress	cytosol	80.36	77.1
GSMUA_Achr11P...	Banana	cytosol	76.44	76.9
GSMUA_Achr11P...	Banana	cytosol	75.83	76.76
AT1G50390.1	Thale cress	cytosol	33.84	76.71
CDX86540	Canola	cytosol	79.76	76.52
Bra030634.1-P	Field mustard	cytosol	80.06	76.37
GSMUA_Achr11P...	Banana	cytosol	75.83	75.38
GSMUA_Achr6P12500_001	Banana	cytosol	46.53	74.4
EES04029	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	71.6	73.37
Zm00001d042536_P001	Maize	cytosol	62.84	73.24
CDY10167	Canola	endoplasmic reticulum, golgi	80.66	72.75
CDY47709	Canola	endoplasmic reticulum, golgi	74.02	72.49
Zm00001d012173_P001	Maize	plasma membrane	70.69	72.45
GSMUA_AchrUn_...	Banana	cytosol	71.6	72.26
Os01t0894300-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	69.79	71.52
TraesCS3B01G433000.1	Wheat	golgi	67.98	69.66
TraesCS3A01G400000.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	67.98	69.66
TraesCS3D01G394200.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	67.67	69.35
CDY09993	Canola	cytosol	21.75	69.23
TraesCS5D01G293800.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	67.37	69.04
TraesCS5B01G285500.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	67.37	69.04
TraesCS5A01G286200.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	67.37	69.04
Bra032442.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	23.57	66.67
CDY15557	Canola	cytosol	32.93	66.46
CDX71905	Canola	mitochondrion	18.13	65.22
KRG92467	Soybean	cytosol, nucleus	64.35	65.14
KRH34333	Soybean	cytosol, nucleus	64.35	65.14
HORVU5Hr1G076230.5	Barley	plastid	67.67	62.57
KRH17371	Soybean	cytosol	48.94	61.83
KRG91421	Soybean	cytosol	62.84	61.0
KRH35400	Soybean	cytosol, nucleus	61.93	60.12
CDY05997	Canola	cytosol, mitochondrion	24.17	59.7
KRH09171	Soybean	cytosol	61.03	57.88
KRH38640	Soybean	cytosol, golgi, plastid	60.73	56.3
KRH73007	Soybean	plastid	62.84	54.31
KRH00623	Soybean	plastid	48.94	50.78
KRH40559	Soybean	plastid	54.98	50.42
KRH75791	Soybean	nucleus	36.56	25.91
KRH65986	Soybean	nucleus	31.72	23.86
KRH75089	Soybean	nucleus	34.44	19.9
KRH70953	Soybean	nucleus	33.84	19.55

Protein Annotations

EntrezGene:100780082	MapMan:3.1.4.4	Gene3D:3.40.1190.20	EMBL:ACUP02006806	InterPro:Carboh/pur_kinase_PfkB_CS	EnsemblPlantsGene:GLYMA_11G127200
GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301
GO:GO:0016310	GO:GO:0016740	GO:GO:0016773	UniProt:I1LJP3	InterPro:IPR029056	EnsemblPlants:KRH29617
ProteinID:KRH29617	ProteinID:KRH29617.1	PFAM:PF00294	PRINTS:PR00990	ScanProsite:PS00583	ScanProsite:PS00584
PANTHER:PTHR43085	PANTHER:PTHR43085:SF6	InterPro:PfkB_dom	InterPro:Ribo/fructo_kinase	InterPro:Ribokinase-like	SUPFAM:SSF53613
UniParc:UPI000233D126	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:-:9660434..9665570

Molecular Weight (calculated)

35428.4 Da

IEP (calculated)

4.727

GRAVY (calculated)

0.076

Length

331 amino acids

Sequence
(BLAST)

001: MASSTNALPP TGNGLIVSFG EMLIDFVPTV SGVSLAEAPG FLKAPGGAPA NVAIAVARLG GKAAFVGKLG DDEFGHMLAG ILKENDVRSD GINFDQGART
101: ALAFVTLRAD GEREFMFYRN PSADMLLTPE DLNLELIRSA KVFHYGSISL IVEPCRSAHL KAMEVAREAG CLLSYDPNLR LPLWPSAEEA RQQILSIWDK
201: ADVIKVSDVE LEFLTGSDKI DDASALSLWH PNLKLLLVTL GEHGSRYYTK NFHGSVEAFH VSTVDTTGAG DSFVGALLSK IVDDQSVLED EARLREVLKF
301: ANACGAITTT KKGAIPALPT EADALNLIKE A

Best Arabidopsis Sequence Match ( AT1G06030.1 )
(BLAST)

001: MTSSNGDNKG LVVSFGEMLI DFVPTESGVS LSESSGFLKA PGGAPANVAI AVSRLGGRAA FVGKLGDDEF GHMLAGILRK NDVDDQGINF DKGARTALAF
101: VTLRSDGERE FMFYRNPSAD MLLRPDELNL ELIRSAKVFH YGSISLITEP CRSAHMKAME VAKEAGALLS YDPNLREPLW PSPEEARKQI MSIWDKADII
201: KVSDVELEFL TGNKTIDDET AMSLWHPNLK LLLVTLGENG CRYYTKDFHG SVETFHVDAV DTTGAGDSFV GALLNQIVDD QSVLEEEERL RKVLRFANAC
301: GAITTTKKGA IPALPTDCEA LSFLKIQVE

Arabidopsis Description

Probable fructokinase-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNE3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.