CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 8
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH75791	Soybean	nucleus	91.82	86.51
CDX78206	Canola	cytosol	64.32	74.87
Bra007044.1-P	Field mustard	cytosol	64.09	74.6
PGSC0003DMT400052461	Potato	cytosol	65.23	73.97
CDX73510	Canola	plastid	69.55	66.09
AT3G54090.1	Thale cress	plastid	68.18	63.69
Solyc09g011850.2.1	Tomato	nucleus	68.64	63.18
GSMUA_Achr10P...	Banana	plastid	65.91	54.92
Os01t0851000-01	Rice	plastid	61.36	50.85
Zm00001d042847_P001	Maize	plastid	60.0	50.67
OQU87871	Sorghum	plastid	60.0	50.38
TraesCS3A01G365700.1	Wheat	plastid	59.32	50.0
TraesCS3B01G397500.1	Wheat	plastid	58.86	49.43
TraesCS3D01G358800.1	Wheat	plastid	58.86	49.24
VIT_08s0007g01640.t01	Wine grape	cytosol	63.86	39.03
KRH17371	Soybean	cytosol	20.23	33.97
KRH23212	Soybean	endoplasmic reticulum	24.77	32.93
KRG92467	Soybean	cytosol, nucleus	24.09	32.42
KRH10125	Soybean	endoplasmic reticulum, nucleus	24.09	32.12
KRH34333	Soybean	cytosol, nucleus	23.86	32.11
KRH29617	Soybean	endoplasmic reticulum	23.86	31.72
KRH35400	Soybean	cytosol, nucleus	24.09	31.09
KRH09171	Soybean	cytosol	24.09	30.37
KRH24618	Soybean	cytosol, peroxisome, plastid	23.86	30.26
KRG91421	Soybean	cytosol	23.41	30.21
KRH75089	Soybean	nucleus	39.32	30.19
KRH73007	Soybean	plastid	25.68	29.5
KRH70953	Soybean	nucleus	38.18	29.32
KRH38640	Soybean	cytosol, golgi, plastid	23.64	29.13
KRH40559	Soybean	plastid	21.82	26.59
KRH00623	Soybean	plastid	19.09	26.33

Protein Annotations

EMBL:ACUP02001848	EnsemblPlants:KRH65986	EnsemblPlantsGene:GLYMA_03G074800	Gene3D:3.40.1190.20	InterPro:IPR029056	InterPro:PfkB_dom
InterPro:Ribokinase-like	PANTHER:PTHR43085	PANTHER:PTHR43085:SF10	PFAM:PF00294	ProteinID:KRH65986	ProteinID:KRH65986.1
SEG:seg	SUPFAM:SSF53613	UniParc:UPI0006EDD85A	UniProt:A0A0R0KL40	MapMan:15.6.1.2.2.6	:

Description

hypothetical protein

Coordinates

chr3:+:18555878..18558484

Molecular Weight (calculated)

50934.3 Da

IEP (calculated)

5.402

GRAVY (calculated)

-0.605

Length

440 amino acids

Sequence
(BLAST)

001: MASLHHLLLL PFPHSSTPHK PPSFQRSKTL LRASTVESPT PKRRGRKKKP ETQTPSNNTP PPQNADNKTE EDELHDYDDG VDFPYSDPPL ICCFGLARKE
101: FVPAVRVQDY PMHPDIYSEW KMLQWKPPEF ARAPGRPAVG DDEFGEEMVL MMNEERVQTR GVKIDSKCRT GCSYMKVKFE EEGRMKMETV REAAEDSLLA
201: NELNLAVLKE ARIFHFNSEV LTCPSMESTL FRAIKWTKKF DGLVFFDLNL PLPLWRSHDE TREIIKKAWN EADIIEVSRS ELEFLLDEEY YERKRNYRPQ
301: YFAENYEQTK NRQEYYHYTA EEVSPLWHDR LKFLFVTDGT LGIHYYTPSF DGSVMGTEDV LITPYTCDRT GSGDAVVAAI LRKLTTCPEM FENQDVLERQ
401: LRFAVAAGII SQWTIGAVRG FPTESATQNL KEQVYVPSLW

Best Arabidopsis Sequence Match ( AT3G54090.1 )
(BLAST)

001: MASLLIFPHL HHFDSSLDRR EVLVVRHSQA SRRFLTPKAS INGSGITNGA AAETTSKPSR KGRKKKQTST VIEKDNTETD PELNPELADY DDGIEFPYDD
101: PPLVCCFGAV QKEFVPVVRV HDNPMHPDMY SQWKMLQWDP PEFGRAPGGP PSNVAISHVR LGGRAAFMGK VGEDDFGDEL VLMMNQERVQ TRAVKFDENS
201: KTACTRVKIK FKDGKMMAET VKEPPEDSLF ASELNLAVLK EARIFHFNSE VLTSPTMQST LFTAIQWSKK FGGLIFFDLN LPLPLWRSRN ETRKLIKKAW
301: NEANIIEVSQ QELEFLLDED YYERRRNYTP QYFAEDFDQT KNRRDYYHYT PEEIKSLWHD KLKLLVVTDG TLRLHYYTPT FDGVVIGTED VLITPFTCDR
401: TGSGDAVVAG IMRKLTTCPE MFEDQDVMER QLRFAVAAGI IAQWTIGAVR GFPTESATQN LKEQVYVPSM W

Arabidopsis Description

FLN1Fructokinase-like 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M394]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.