Factsheet for Solyc09g011850.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 8
cytosol 2

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400052461	Potato	cytosol	78.87	97.16
Bra007044.1-P	Field mustard	cytosol	64.02	80.95
CDX78206	Canola	cytosol	64.02	80.95
CDX73510	Canola	plastid	68.41	70.63
KRH65986	Soybean	nucleus	63.18	68.64
AT3G54090.1	Thale cress	plastid	67.36	68.37
KRH75791	Soybean	nucleus	65.48	67.02
GSMUA_Achr10P...	Banana	plastid	64.85	58.71
Zm00001d042847_P001	Maize	plastid	60.04	55.09
TraesCS3A01G365700.1	Wheat	plastid	59.83	54.79
OQU87871	Sorghum	plastid	59.83	54.58
TraesCS3B01G397500.1	Wheat	plastid	59.62	54.39
TraesCS3D01G358800.1	Wheat	plastid	59.41	53.99
Os01t0851000-01	Rice	plastid	59.62	53.67
VIT_08s0007g01640.t01	Wine grape	cytosol	66.95	44.44
Solyc06g073190.2.1	Tomato	extracellular	25.1	36.59
Solyc11g042850.1.1	Tomato	unclear	23.64	34.77
Solyc03g006860.2.1	Tomato	cytosol	23.85	32.85
Solyc10g017620.2.1	Tomato	plastid	24.48	31.2
Solyc02g091490.2.1	Tomato	plastid	24.9	30.59
Solyc05g012100.2.1	Tomato	nucleus	39.12	28.99

Protein Annotations

MapMan:15.6.1.2.2.6	Gene3D:3.40.1190.20	InterPro:Carboh/pur_kinase_PfkB_CS	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009295	GO:GO:0009507
GO:GO:0009536	GO:GO:0009658	GO:GO:0009987	GO:GO:0016043	GO:GO:0016740	GO:GO:0016773
GO:GO:0042644	GO:GO:0042793	GO:GO:0043621	InterPro:IPR029056	UniProt:K4CRL1	PFAM:PF00294
ScanProsite:PS00583	PANTHER:PTHR43085	PANTHER:PTHR43085:SF10	InterPro:PfkB_dom	InterPro:Ribokinase-like	SUPFAM:SSF53613
EnsemblPlantsGene:Solyc09g011850.2	EnsemblPlants:Solyc09g011850.2.1	UniParc:UPI000276B535	SEG:seg	:	:

Description

Fructokinase-like 1, chloroplastic [Source:Projected from Arabidopsis thaliana (AT3G54090) UniProtKB/Swiss-Prot;Acc:Q9M394]

Coordinates

chr9:+:5125301..5128168

Molecular Weight (calculated)

54723.8 Da

IEP (calculated)

6.848

GRAVY (calculated)

-0.614

Length

478 amino acids

Sequence
(BLAST)

001: MATIHFLPQS LPHHHSHNSL NPTIFFSSSK FPYRTNPPKS TTNDHPTTTQ EPPTPSRRGR KKSSTPTTSK KSRTPKDSNF DINIAESNTQ MEEIDDYDDG
101: VDFPYPNPPL VCCFGAAQKE FVPTVRVSPE QMDKDKYSEW KMLQWNPPEF VRAPGGPPSN VAISHVRLGG RAAFMGKVGS DELGQEMVLL MNKEKVQTRA
201: VKFSDSMRTG CSYMEIKFKD GKMRVEKVQD SAEDSLLSSE LNLDVLKEAR MFHFNSEVLT SSSMRSTLFK AITLSKKFGG LVFFDLNLPL PLWRSRDETR
301: DLIKEAWQQA NIIEVSRQEL EFLLDEEHYE RKRNYRPQYF AENYEQTKQR RNYYHYTPEE IAPLWHDGLK LLFVTDGTLR IHYYSPSFDG VVVGTEDVLI
401: TPFTCDRTGS GDAVVAGIMR KLTTQPEMYH DQDVLERQLR FAIAAGIISQ WTIGAVRGFP TESATQNLKE QVYVPSMW

Best Arabidopsis Sequence Match ( AT3G54090.1 )
(BLAST)

001: MASLLIFPHL HHFDSSLDRR EVLVVRHSQA SRRFLTPKAS INGSGITNGA AAETTSKPSR KGRKKKQTST VIEKDNTETD PELNPELADY DDGIEFPYDD
101: PPLVCCFGAV QKEFVPVVRV HDNPMHPDMY SQWKMLQWDP PEFGRAPGGP PSNVAISHVR LGGRAAFMGK VGEDDFGDEL VLMMNQERVQ TRAVKFDENS
201: KTACTRVKIK FKDGKMMAET VKEPPEDSLF ASELNLAVLK EARIFHFNSE VLTSPTMQST LFTAIQWSKK FGGLIFFDLN LPLPLWRSRN ETRKLIKKAW
301: NEANIIEVSQ QELEFLLDED YYERRRNYTP QYFAEDFDQT KNRRDYYHYT PEEIKSLWHD KLKLLVVTDG TLRLHYYTPT FDGVVIGTED VLITPFTCDR
401: TGSGDAVVAG IMRKLTTCPE MFEDQDVMER QLRFAVAAGI IAQWTIGAVR GFPTESATQN LKEQVYVPSM W

Arabidopsis Description

FLN1Fructokinase-like 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M394]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.