Factsheet for Solyc05g012100.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
mitochondrion 4
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g096480.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G69200.1	Solyc01g096480.2.1	AT3G06730.1	20511297

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400072750	Potato	mitochondrion	94.88	94.15
VIT_01s0011g00240.t01	Wine grape	mitochondrion, plastid	55.19	63.01
KRH70953	Soybean	nucleus	52.71	59.34
KRH75089	Soybean	nucleus	52.71	59.34
CDY54150	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	42.33	57.84
CDX95956	Canola	plastid	51.47	54.61
Bra004365.1-P	Field mustard	plastid	51.47	53.81
AT1G69200.1	Thale cress	plastid	50.7	53.26
CDY40900	Canola	plastid	50.7	53.08
HORVU4Hr1G032860.1	Barley	cytosol	23.57	46.2
EER93838	Sorghum	mitochondrion	41.71	46.14
HORVU7Hr1G106650.1	Barley	cytosol	15.04	45.75
Os03t0602600-01	Rice	nucleus	41.4	45.33
TraesCS2A01G111500.1	Wheat	plastid	40.31	44.98
TraesCS2D01G014800.1	Wheat	plastid	40.31	44.98
HORVU2Hr1G002260.1	Barley	plastid	40.16	44.81
HORVU2Hr1G002180.1	Barley	plastid	40.16	44.81
TraesCS2B01G004000.1	Wheat	plastid	39.84	44.46
Zm00001d033181_P001	Maize	plastid	41.4	40.39
Solyc09g011850.2.1	Tomato	nucleus	28.99	39.12
Solyc06g073190.2.1	Tomato	extracellular	16.59	32.62
Solyc03g006860.2.1	Tomato	cytosol	17.36	32.28
Solyc11g042850.1.1	Tomato	unclear	15.5	30.77
Solyc02g091490.2.1	Tomato	plastid	17.36	28.79
Solyc10g017620.2.1	Tomato	plastid	15.97	27.47

Protein Annotations

MapMan:15.6.1.2.2.12	Gene3D:3.40.1190.20	ncoils:Coil	GO:GO:0000427	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009295	GO:GO:0009536	GO:GO:0009658	GO:GO:0009662	GO:GO:0009987
GO:GO:0016043	GO:GO:0042644	GO:GO:0042793	InterPro:IPR029056	UniProt:K4BXT3	PFAM:PF00294
PANTHER:PTHR43085	PANTHER:PTHR43085:SF2	InterPro:PfkB_dom	InterPro:Ribokinase-like	SUPFAM:SSF53613	EnsemblPlantsGene:Solyc05g012100.2
EnsemblPlants:Solyc05g012100.2.1	UniParc:UPI00027673E8	SEG:seg	:	:	:

Description

Fructokinase-like 2, chloroplastic [Source:Projected from Arabidopsis thaliana (AT1G69200) UniProtKB/Swiss-Prot;Acc:F4I0K2]

Coordinates

chr5:+:5311181..5315705

Molecular Weight (calculated)

72257.6 Da

IEP (calculated)

6.592

GRAVY (calculated)

-0.615

Length

645 amino acids

Sequence
(BLAST)

001: MAALSFSFFS TLSRQHLHWN FYPNLKVMQL QDLKLKNKWV LMAVSKGGTT EGIPEELSET EVVGAGKKTG RTSKQAPVLS RRKKVVEFSN DEEAENTSGS
101: IEEPKKTQRR TRKKKDTVES SIGDSISDVE GNVTDEDAVT EPESSGKPKK TRRTRKKKEI KESSFEDSVL GVEGNVTDEE GSPTSRSSEE PVEKRKRTAK
201: KAASSSSSLE KEPTQKATRG RRKKVRNLED EGSQSELSDI EEELHVANVD ADNEEELDFD IDVGEDISFT YGWPPLVCCF GAAQHAFVPS GRPSNRLVDH
301: EWHERMKDVM WDPEKFIRAP GGCSSNVAVA LASLGGKVAF MGKLGDDDFG QSLVYFMNIN KVQTRSVRLD SKRATAITHM KIGKRGGLRM TTTKACAEDS
401: LLKSEINIDV LKEAKMFYFN TFSLLDPNMR LTTLRATKIS KKLGGVVFYD LNLPSPLWES GEKAKTFIQK AWNLADIIEV TKQELEFLCG IEPSEKFDTK
501: DNDRSKFTHY PPEVIAPLWH ENLKILFMTN GTSKIHYYTK EHNGSVLGLE DVPLSPYTSD MSASGDGIIA GIIRMLTVQP HLMTDKGYLE RTLKYAISCG
601: VVDQWLQARR LGYPPKEGME DDVVPDDHGI RSVTEREYRT LVPVS

Best Arabidopsis Sequence Match ( AT1G69200.1 )
(BLAST)

001: MASLSFTQFL SFPRCNADVP CLLQSHGFVK FRGERWNGKQ SFSMAAGRRK LSESAPLEEE GNDGNGAVVG KKPSKSVKRT TKKKVVVKDE PLEEISEFLV
101: DNDDVLDKES IVSALKPKKT RTRKKAAAAS SDVEEVKTEK KVRRKRTVKK DKDVEDDLAT IMDAEVSDVE EALAVESTDT ESEEEEIDLS KHEGEDISHT
201: YGWPPLVCCF GSAQHAFVPS GRPANRLLDY ELHERMRDAK WAPEKYIRAP GGCAGGVAIA LASLGGKVAF MGKLGADDYG QAMLYYLNVC KVQTRSVKID
301: GKRVTACSTM KISKRGRLKS TCIKPCAEDS LSKSEINVDV LKEAKMFYFS THSLLDKKMM STTIQAIKIS KQLGNVIFYD LNLPLPLWHS SEETKSFIQE
401: VWNLADVIEI TKQELEFLCG IEPTEEFDTE NNDISKFVHY PPETVEQLWH ENLKVLFVTN GTSKIHYYTK EHNGAVSGME DVPITPFTRD MSASGDGIVA
501: GLIRMLTVQP DLMNNKGYLE RTARYAIECG IIDQWLLAQT RGYPPKDDME EEEDDEEEDE VESDPNGIRS ITEKEYRTSK PYDEPDGPYV MKPVEEREYK
601: KLELVGSMFE DGSL

Arabidopsis Description

FLN2Fructokinase-like 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4I0K2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.