Factsheet for VIT_01s0011g00240.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, mitochondrion

Predictor Summary:

plastid 5
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_13s0084g00790.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G69200.1	VIT_13s0084g00790.t01	AT3G06730.1	20511297

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH75089	Soybean	nucleus	66.37	65.44
KRH70953	Soybean	nucleus	65.31	64.4
CDY54150	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	50.27	60.17
CDX95956	Canola	plastid	63.01	58.55
Bra004365.1-P	Field mustard	plastid	63.36	58.02
AT1G69200.1	Thale cress	plastid	63.01	57.98
CDY40900	Canola	plastid	62.65	57.47
Solyc05g012100.2.1	Tomato	nucleus	63.01	55.19
PGSC0003DMT400072750	Potato	mitochondrion	63.19	54.92
EER93838	Sorghum	mitochondrion	49.73	48.2
Os03t0602600-01	Rice	nucleus	49.73	47.71
HORVU4Hr1G032860.1	Barley	cytosol	27.61	47.42
TraesCS2D01G014800.1	Wheat	plastid	48.14	47.06
TraesCS2B01G004000.1	Wheat	plastid	47.61	46.54
TraesCS2A01G111500.1	Wheat	plastid	47.26	46.19
HORVU2Hr1G002260.1	Barley	plastid	46.9	45.85
HORVU2Hr1G002180.1	Barley	plastid	46.9	45.85
HORVU7Hr1G106650.1	Barley	cytosol	17.17	45.75
Zm00001d033181_P001	Maize	plastid	49.2	42.06
VIT_18s0089g01230.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	18.41	31.71
VIT_05s0102g00710.t01	Wine grape	cytosol, extracellular, plasma membrane	18.23	31.21
VIT_16s0022g02340.t01	Wine grape	cytosol	18.94	30.92
VIT_15s0048g01260.t01	Wine grape	cytosol	19.29	29.38
VIT_14s0006g01410.t01	Wine grape	plastid	19.82	29.17
VIT_08s0007g01640.t01	Wine grape	cytosol	33.27	26.11

Protein Annotations

EntrezGene:100247573	wikigene:100247573	MapMan:15.6.1.2.2.12	Gene3D:3.40.1190.20	ProteinID:CBI27307	ProteinID:CBI27307.3
ncoils:Coil	UniProt:D7T9Y5	EMBL:FN595752	GO:GO:0000427	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009295	GO:GO:0009536	GO:GO:0009658	GO:GO:0009662	GO:GO:0009987
GO:GO:0016043	GO:GO:0042644	GO:GO:0042793	InterPro:IPR029056	EntrezGene:LOC100247573	wikigene:LOC100247573
PFAM:PF00294	PANTHER:PTHR43085	PANTHER:PTHR43085:SF2	InterPro:PfkB_dom	InterPro:Ribokinase-like	SUPFAM:SSF53613
UniParc:UPI0001BE2DF6	ArrayExpress:VIT_01s0011g00240	EnsemblPlantsGene:VIT_01s0011g00240	EnsemblPlants:VIT_01s0011g00240.t01	unigene:Vvi.19348	RefSeq:XP_002273674
RefSeq:XP_002273674.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1:+:305943..311656

Molecular Weight (calculated)

63150.1 Da

IEP (calculated)

6.594

GRAVY (calculated)

-0.473

Length

565 amino acids

Sequence
(BLAST)

001: MASLSFTQFL SLPRWHSNLP LYTSLNLMQI QDIRLQNRWE LTAVSKKKIV ESLAVTEEPV VVKKKSKQSP TRSRKKAVPD TPEENSELSV KSDVTEVVVN
101: TPSASSDASK KTPRRTRRKA ASSSTGIMEE RIEKKVRTRR KTTKKVDNIE DQGGETDLSD HEGSTFTAKV EDEEEEDLDL GKDDEDISST YGWPPLVCCF
201: GAAQHAFVPS GRPANRLIDH EIHERMKDTF WNPEKFVRAP GGSAGSVAVA LASLGGKVAF MGKLGDDDFG QTMLYYMNVS NVQTRSVCID GKKATAVSQM
301: KIGRRGGLKM TCVKPCAEDS LSRSEINIDV LREAKMFYFN TSSLLDQNMA STTFRAIKIS KKLGGVIFYD LNLPLPLWQS GQETKKFIQQ AWNLADIIEV
401: TKQELEFICG IKSTENFDTK DNNNSKFVHY DPVVVGPLWH ENLKVLFVTN GTSKIHFYTK EENGAVHGME DAPITPFTCD MSASGDGIVA GLMRMLTVQP
501: HLITDKGYLE HSIRYAIDCG VIDQWLLARQ RGYPPKEDVE EEVVPDQDGI RSITEKEYRT LAPVS

Best Arabidopsis Sequence Match ( AT1G69200.1 )
(BLAST)

001: MASLSFTQFL SFPRCNADVP CLLQSHGFVK FRGERWNGKQ SFSMAAGRRK LSESAPLEEE GNDGNGAVVG KKPSKSVKRT TKKKVVVKDE PLEEISEFLV
101: DNDDVLDKES IVSALKPKKT RTRKKAAAAS SDVEEVKTEK KVRRKRTVKK DKDVEDDLAT IMDAEVSDVE EALAVESTDT ESEEEEIDLS KHEGEDISHT
201: YGWPPLVCCF GSAQHAFVPS GRPANRLLDY ELHERMRDAK WAPEKYIRAP GGCAGGVAIA LASLGGKVAF MGKLGADDYG QAMLYYLNVC KVQTRSVKID
301: GKRVTACSTM KISKRGRLKS TCIKPCAEDS LSKSEINVDV LKEAKMFYFS THSLLDKKMM STTIQAIKIS KQLGNVIFYD LNLPLPLWHS SEETKSFIQE
401: VWNLADVIEI TKQELEFLCG IEPTEEFDTE NNDISKFVHY PPETVEQLWH ENLKVLFVTN GTSKIHYYTK EHNGAVSGME DVPITPFTRD MSASGDGIVA
501: GLIRMLTVQP DLMNNKGYLE RTARYAIECG IIDQWLLAQT RGYPPKDDME EEEDDEEEDE VESDPNGIRS ITEKEYRTSK PYDEPDGPYV MKPVEEREYK
601: KLELVGSMFE DGSL

Arabidopsis Description

FLN2Fructokinase-like 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4I0K2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.