CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plasma membrane, golgi

Predictor Summary:

cytosol 2
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	secretory
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY05289
CDY24669
CDY34934

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G69200.1	CDY05289	AT3G06730.1	20511297
AT1G69200.1	CDY24669	AT3G06730.1	20511297
AT1G69200.1	CDY34934	AT3G06730.1	20511297

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX95956	Canola	plastid	86.44	67.11
CDY40900	Canola	plastid	86.02	65.91
Bra004365.1-P	Field mustard	plastid	86.02	65.8
AT1G69200.1	Thale cress	plastid	78.81	60.59
VIT_01s0011g00240.t01	Wine grape	mitochondrion, plastid	60.17	50.27
KRH70953	Soybean	nucleus	59.11	48.69
HORVU4Hr1G032860.1	Barley	cytosol	33.9	48.63
KRH75089	Soybean	nucleus	58.9	48.52
CDX78206	Canola	cytosol	34.32	42.86
Solyc05g012100.2.1	Tomato	nucleus	57.84	42.33
PGSC0003DMT400072750	Potato	mitochondrion	58.26	42.31
HORVU7Hr1G106650.1	Barley	cytosol	18.01	40.09
EER93838	Sorghum	mitochondrion	47.88	38.77
TraesCS2D01G014800.1	Wheat	plastid	46.4	37.89
TraesCS2B01G004000.1	Wheat	plastid	46.19	37.72
TraesCS2A01G111500.1	Wheat	plastid	46.19	37.72
Os03t0602600-01	Rice	nucleus	47.03	37.69
HORVU2Hr1G002260.1	Barley	plastid	45.76	37.37
HORVU2Hr1G002180.1	Barley	plastid	45.76	37.37
CDX73510	Canola	plastid	34.11	34.77
Zm00001d033181_P001	Maize	plastid	47.46	33.89
CDX89022	Canola	cytosol	23.31	33.74
CDY00619	Canola	cytosol	23.31	33.74
CDX71907	Canola	cytosol	23.09	33.44
CDY06000	Canola	cytosol	23.09	33.44
CDX67798	Canola	cytosol	22.88	33.13
CDX98377	Canola	cytosol	22.88	33.13
CDY10801	Canola	cytosol	22.03	32.0
CDY56614	Canola	cytosol	22.03	32.0
CDY15383	Canola	cytosol	22.03	31.9
CDY00501	Canola	cytosol	23.09	31.78
CDX84788	Canola	cytosol	21.82	31.69
CDY23944	Canola	cytosol	21.82	31.69
CDY51025	Canola	cytosol	22.88	31.49
CDY38879	Canola	cytosol	22.46	30.9
CDY19092	Canola	plastid, vacuole	22.03	30.77
CDY05089	Canola	cytosol	20.76	30.34
CDX90749	Canola	cytosol	20.76	30.34
CDX86540	Canola	cytosol	21.82	29.86
CDY32617	Canola	cytosol	22.25	29.49
CDY55675	Canola	plastid	22.25	27.06
CDX96146	Canola	plastid	22.03	26.74
CDY10167	Canola	endoplasmic reticulum, golgi	20.76	26.7
CDY47709	Canola	endoplasmic reticulum, golgi	18.01	25.15
CDY15557	Canola	cytosol	8.47	24.39
CDY05997	Canola	cytosol, mitochondrion	5.93	20.9
CDY09993	Canola	cytosol	4.45	20.19
CDX71905	Canola	mitochondrion	3.6	18.48
CDY65484	Canola	cytosol	9.53	18.44
CDY00632	Canola	cytosol	9.53	18.29

Protein Annotations

EnsemblPlants:CDY54150	EnsemblPlantsGene:GSBRNA2T00013441001	Gene3D:3.40.1190.20	InterPro:IPR029056	InterPro:PfkB_dom	InterPro:Ribokinase-like
ncoils:Coil	PANTHER:PTHR43085	PANTHER:PTHR43085:SF2	PFAM:PF00294	ProteinID:CDY54150	ProteinID:CDY54150.1
SEG:seg	SUPFAM:SSF53613	UniParc:UPI0004EDE15D	UniProt:A0A078ISP7	MapMan:15.6.1.2.2.12	:

Description

BnaCnng26300DBnaCnng26300D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ISP7]

Coordinates

chrLK033283:-:63208..65241

Molecular Weight (calculated)

49334.0 Da

IEP (calculated)

5.006

GRAVY (calculated)

-0.361

Length

472 amino acids

Sequence
(BLAST)

001: MKTIKKNQLT FNFLSILEKV TLKLANLPLS LSLSLSXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX PLVFCFGSAQ HACVRSGRPA NRLLDYEQQE
101: RIKDAVWAPE KYIRAPGGCA GGVAIALASL GGNVAFMGKL GDDDFGQAML YYLNVCKVQT RSVKIDSKRV TACSTMKISK RGRLKSTCVK PCAEDSLSKS
201: EINVDVLKEA KMFYFTTHSL LDKKMMSTTL QAIKISKQLG NVIFYDLNLP LPLWQSREET KSLIQEVWDL ADVIEVTKQE LEFLCGIEPP EEFDTKNNDS
301: SKFVHYEPET VEPLWHENLK VLFVTNGTSK IHYYTKEHNG AVLGMEDVPI TPFTRDMSAS GDGIVAGLIR MLTVQPDLMN DKGYLERTAR YAIECGVVDQ
401: WLLAQTRGYP PKDDMEEDED DPNGIRSITE REYRTSKPYD EPDGPYVMKP EEEREYRKLE LVGSVGEDDD SS

Best Arabidopsis Sequence Match ( AT1G69200.1 )
(BLAST)

001: MASLSFTQFL SFPRCNADVP CLLQSHGFVK FRGERWNGKQ SFSMAAGRRK LSESAPLEEE GNDGNGAVVG KKPSKSVKRT TKKKVVVKDE PLEEISEFLV
101: DNDDVLDKES IVSALKPKKT RTRKKAAAAS SDVEEVKTEK KVRRKRTVKK DKDVEDDLAT IMDAEVSDVE EALAVESTDT ESEEEEIDLS KHEGEDISHT
201: YGWPPLVCCF GSAQHAFVPS GRPANRLLDY ELHERMRDAK WAPEKYIRAP GGCAGGVAIA LASLGGKVAF MGKLGADDYG QAMLYYLNVC KVQTRSVKID
301: GKRVTACSTM KISKRGRLKS TCIKPCAEDS LSKSEINVDV LKEAKMFYFS THSLLDKKMM STTIQAIKIS KQLGNVIFYD LNLPLPLWHS SEETKSFIQE
401: VWNLADVIEI TKQELEFLCG IEPTEEFDTE NNDISKFVHY PPETVEQLWH ENLKVLFVTN GTSKIHYYTK EHNGAVSGME DVPITPFTRD MSASGDGIVA
501: GLIRMLTVQP DLMNNKGYLE RTARYAIECG IIDQWLLAQT RGYPPKDDME EEEDDEEEDE VESDPNGIRS ITEKEYRTSK PYDEPDGPYV MKPVEEREYK
601: KLELVGSMFE DGSL

Arabidopsis Description

FLN2Fructokinase-like 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4I0K2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.