Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G06730.1 | CDX95956 | AT1G69200.1 | 20511297 |
| AT3G06730.1 | CDY40900 | AT1G69200.1 | 20511297 |
| AT3G06730.1 | CDY54150 | AT1G69200.1 | 20511297 |
| AT3G06730.1 | CDX73510 | AT3G54090.1 | 20511297 |
| AT3G06730.1 | CDX78206 | AT3G54090.1 | 20511297 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040287.1-P | Field mustard | plastid | 96.57 | 93.89 |
| CDY05289 | Canola | mitochondrion, plastid | 92.57 | 88.52 |
| CDY24669 | Canola | mitochondrion, plastid | 84.0 | 88.02 |
| AT3G06730.1 | Thale cress | plastid | 89.14 | 85.25 |
| VIT_13s0084g00790.t01 | Wine grape | plastid | 70.29 | 66.85 |
| PGSC0003DMT400013827 | Potato | plastid | 64.0 | 64.0 |
| Solyc01g096480.2.1 | Tomato | plastid | 63.43 | 63.43 |
| KRH62827 | Soybean | nucleus | 65.71 | 59.9 |
| KRH30074 | Soybean | nucleus | 65.71 | 59.28 |
| GSMUA_Achr8P27150_001 | Banana | plastid | 56.0 | 54.44 |
| TraesCS4B01G074900.1 | Wheat | plastid | 57.14 | 54.35 |
| Os08t0378900-02 | Rice | plastid | 56.57 | 52.38 |
| TraesCS4D01G073500.1 | Wheat | plastid | 54.29 | 51.35 |
| Zm00001d032337_P001 | Maize | plastid | 55.43 | 50.79 |
| EES14934 | Sorghum | plastid | 55.43 | 50.0 |
| TraesCS4A01G240000.1 | Wheat | plastid | 54.86 | 48.48 |
| HORVU4Hr1G012560.15 | Barley | cytosol, plastid | 50.29 | 39.29 |
Protein Annotations
| MapMan:10.5.9 | MapMan:15.6.1.2.2.10 | Gene3D:3.40.30.10 | GO:A0A078HBW3 | UniProt:A0A078HBW3 | EnsemblPlants:CDY34934 |
| ProteinID:CDY34934 | ProteinID:CDY34934.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005623 |
| GO:GO:0006662 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0015035 | GO:GO:0019725 |
| GO:GO:0045454 | GO:GO:0055114 | EnsemblPlantsGene:GSBRNA2T00057512001 | InterPro:IPR013766 | PFAM:PF00085 | PRINTS:PR00421 |
| PFscan:PS51352 | PANTHER:PTHR10438 | PANTHER:PTHR10438:SF276 | SUPFAM:SSF52833 | InterPro:Thioredoxin | InterPro:Thioredoxin-like_sf |
| InterPro:Thioredoxin_domain | UniParc:UPI0004EF4853 | SEG:seg | : | : | : |
Description
BnaA01g32650DBnaA01g32650D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HBW3]
Coordinates
chrLK032343:-:216425..218038
Molecular Weight (calculated)
19693.1 Da
IEP (calculated)
5.028
GRAVY (calculated)
-0.065
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MALVQSVTLS RLNVPLSPIL STLHAPSSIR RPPFSSSTAG NLSFSPLTHQ RKLLCPPPRG KFVREDYLVK KLSAEELQEL VKGERKVPVI VDFYATWCGP
101: CILMAQELEM LAVEYESNAM IVKVDTDDEY EFARDMQVRG LPTLLFISPD PSKDAIRTEG LIPIQMMRDI IDNDM
101: CILMAQELEM LAVEYESNAM IVKVDTDDEY EFARDMQVRG LPTLLFISPD PSKDAIRTEG LIPIQMMRDI IDNDM
001: MALVQSRTFP HLNTPLSPIL SSLHAPSSLF IRREIRPVAA PFSSSTAGNL PFSPLTRPRK LLCPPPRGKF VREDYLVKKL SAQELQELVK GDRKVPLIVD
101: FYATWCGPCI LMAQELEMLA VEYESNAIIV KVDTDDEYEF ARDMQVRGLP TLFFISPDPS KDAIRTEGLI PLQMMHDIID NEM
101: FYATWCGPCI LMAQELEMLA VEYESNAIIV KVDTDDEYEF ARDMQVRGLP TLFFISPDPS KDAIRTEGLI PLQMMHDIID NEM
Arabidopsis Description
CITRXThioredoxin-like protein CITRX, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M7X9]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.