CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 8
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH65986
KRH70953
KRH75089
KRH75791

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06730.1	KRH70953	AT1G69200.1	20511297
AT3G06730.1	KRH75089	AT1G69200.1	20511297
AT3G06730.1	KRH65986	AT3G54090.1	20511297
AT3G06730.1	KRH75791	AT3G54090.1	20511297

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH62827	Soybean	nucleus	89.18	90.1
CDY24669	Canola	mitochondrion, plastid	57.22	66.47
CDY34934	Canola	plastid	59.28	65.71
VIT_13s0084g00790.t01	Wine grape	plastid	61.86	65.22
AT3G06730.1	Thale cress	plastid	61.34	65.03
CDY05289	Canola	mitochondrion, plastid	61.34	65.03
Bra040287.1-P	Field mustard	plastid	60.31	65.0
Solyc01g096480.2.1	Tomato	plastid	55.15	61.14
PGSC0003DMT400013827	Potato	plastid	55.15	61.14
Bra029601.1-P	Field mustard	plastid	42.27	57.75
GSMUA_Achr8P27150_001	Banana	plastid	52.58	56.67
TraesCS4B01G074900.1	Wheat	plastid	48.97	51.63
TraesCS4D01G073500.1	Wheat	plastid	46.91	49.19
Zm00001d032337_P001	Maize	plastid	46.91	47.64
Os08t0378900-02	Rice	plastid	45.88	47.09
TraesCS4A01G240000.1	Wheat	plastid	47.42	46.46
EES14934	Sorghum	plastid	46.39	46.39
HORVU4Hr1G012560.15	Barley	cytosol, plastid	45.36	39.29

Protein Annotations

MapMan:10.5.9	MapMan:15.6.1.2.2.10	Gene3D:3.40.30.10	EMBL:ACUP02006871	EnsemblPlantsGene:GLYMA_11G156500	GO:GO:0003674
GO:GO:0003824	GO:GO:0004791	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006662	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015035
GO:GO:0016671	GO:GO:0019725	GO:GO:0034599	GO:GO:0045454	GO:GO:0047134	GO:GO:0055114
GO:GO:0098869	UniProt:I1LLG1	InterPro:IPR013766	EnsemblPlants:KRH30074	ProteinID:KRH30074	ProteinID:KRH30074.1
PFAM:PF00085	PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF276	SUPFAM:SSF52833	InterPro:Thioredoxin
InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI00023CCFBA	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr11:-:13713662..13719423

Molecular Weight (calculated)

22416.3 Da

IEP (calculated)

7.582

GRAVY (calculated)

-0.314

Length

194 amino acids

Sequence
(BLAST)

001: MSLFHCHAFH HRMATLSPFS PFNSKPLFAF LPNPSFLTHH QQQQHPYPLT KTTTTDLNNN RPLSLSTLPR KLLCKPPQGK YVREDYLVKK LSAQEIQELV
101: KGERKVPLII DFFATWCGPC ILMAQELETL AVEYQNKALI VKVDTDEEYE FARDMQVRGL PTVFFISPDP NKEAIRTEGL VPIQMMRDII DKDM

Best Arabidopsis Sequence Match ( AT3G06730.1 )
(BLAST)

001: MALVQSRTFP HLNTPLSPIL SSLHAPSSLF IRREIRPVAA PFSSSTAGNL PFSPLTRPRK LLCPPPRGKF VREDYLVKKL SAQELQELVK GDRKVPLIVD
101: FYATWCGPCI LMAQELEMLA VEYESNAIIV KVDTDDEYEF ARDMQVRGLP TLFFISPDPS KDAIRTEGLI PLQMMHDIID NEM

Arabidopsis Description

CITRXThioredoxin-like protein CITRX, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M7X9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.