Factsheet for Os08t0378900-02

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

nucleus: 19621931
cytosol: 19685898
plastid: 21433289

msms PMID: 19685898 doi

KA Doroshenk, AJ Crofts, RT Morris, JJ Wyrick, TW Okita

Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164-6340, USA.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0851000-01
Os03t0602600-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06730.1	Os03t0602600-01	AT1G69200.1	20511297
AT3G06730.1	Os01t0851000-01	AT3G54090.1	20511297

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G074900.1	Wheat	plastid	66.14	67.93
TraesCS4D01G073500.1	Wheat	plastid	65.61	67.03
Zm00001d032337_P001	Maize	plastid	65.61	64.92
EES14934	Sorghum	plastid	64.55	62.89
TraesCS4A01G240000.1	Wheat	plastid	65.08	62.12
CDY24669	Canola	mitochondrion, plastid	51.85	58.68
GSMUA_Achr8P27150_001	Banana	plastid	54.5	57.22
CDY34934	Canola	plastid	52.38	56.57
Solyc01g096480.2.1	Tomato	plastid	52.38	56.57
PGSC0003DMT400013827	Potato	plastid	51.85	56.0
Bra040287.1-P	Field mustard	plastid	52.38	55.0
CDY05289	Canola	mitochondrion, plastid	52.91	54.64
AT3G06730.1	Thale cress	plastid	51.85	53.55
VIT_13s0084g00790.t01	Wine grape	plastid	50.79	52.17
HORVU4Hr1G012560.15	Barley	cytosol, plastid	60.85	51.34
KRH62827	Soybean	nucleus	48.15	47.4
Bra029601.1-P	Field mustard	plastid	35.45	47.18
KRH30074	Soybean	nucleus	47.09	45.88

Protein Annotations

MapMan:10.5.9	MapMan:15.6.1.2.2.10	Gene3D:3.40.30.10	EntrezGene:4345435	EMBL:AK058590	EMBL:AK066851
ProteinID:BAC22569.1	ProteinID:BAD05405.1	ProteinID:BAF23601.1	ProteinID:BAT05214.1	ProteinID:EEE68599.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004791	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006662	GO:GO:0006950	GO:GO:0006952	GO:GO:0008150	GO:GO:0008152	GO:GO:0008219
GO:GO:0009295	GO:GO:0009507	GO:GO:0009536	GO:GO:0009579	GO:GO:0009657	GO:GO:0009987
GO:GO:0015035	GO:GO:0016043	GO:GO:0016491	GO:GO:0016671	GO:GO:0019725	GO:GO:0031347
GO:GO:0034051	GO:GO:0034599	GO:GO:0045454	GO:GO:0047134	GO:GO:0055114	GO:GO:0098869
InterPro:IPR013766	EnsemblPlantsGene:Os08g0378900	EnsemblPlants:Os08t0378900-02	PFAM:PF00085	PRINTS:PR00421	ScanProsite:PS00194
PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF276	UniProt:Q8H2V6	SUPFAM:SSF52833	InterPro:Thioredoxin
InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI00000AD8DB	RefSeq:XP_015648902.1	SEG:seg

Description

Similar to Thioredoxin protein. (Os08t0378900-01);Similar to Thioredoxin protein. (Os08t0378900-02)

Coordinates

chr8:-:17818457..17820484

Molecular Weight (calculated)

20529.8 Da

IEP (calculated)

4.862

GRAVY (calculated)

-0.056

Length

189 amino acids

Sequence
(BLAST)

001: MAMAAAASLL PASAAPTLPG RAFRPPRNST PTASLSCDGG SRCRGVGLGV ILGGCRAQGV RRNAAAETYV PGSGKYIAPD YLVKKVTAKE LEELVRGERK
101: VPLIVDFYAT WCGPCVLMAQ DIEMLAVEYE NNALFVKVDT DDEYELARDM QVRGLPTLYF FSPDQSKDAL RTEGLIPIDM IRNIIDNEL

Best Arabidopsis Sequence Match ( AT3G06730.1 )
(BLAST)

001: MALVQSRTFP HLNTPLSPIL SSLHAPSSLF IRREIRPVAA PFSSSTAGNL PFSPLTRPRK LLCPPPRGKF VREDYLVKKL SAQELQELVK GDRKVPLIVD
101: FYATWCGPCI LMAQELEMLA VEYESNAIIV KVDTDDEYEF ARDMQVRGLP TLFFISPDPS KDAIRTEGLI PLQMMHDIID NEM

Arabidopsis Description

CITRXThioredoxin-like protein CITRX, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M7X9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.