Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra004365.1-P | |
| Bra007044.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G06730.1 | Bra004365.1-P | AT1G69200.1 | 20511297 |
| AT3G06730.1 | Bra007044.1-P | AT3G54090.1 | 20511297 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY34934 | Canola | plastid | 93.89 | 96.57 |
| AT3G06730.1 | Thale cress | plastid | 88.33 | 86.89 |
| Bra029601.1-P | Field mustard | plastid | 68.33 | 86.62 |
| VIT_13s0084g00790.t01 | Wine grape | plastid | 68.33 | 66.85 |
| PGSC0003DMT400013827 | Potato | plastid | 62.78 | 64.57 |
| Solyc01g096480.2.1 | Tomato | plastid | 62.78 | 64.57 |
| KRH62827 | Soybean | nucleus | 64.44 | 60.42 |
| KRH30074 | Soybean | nucleus | 65.0 | 60.31 |
| TraesCS4B01G074900.1 | Wheat | plastid | 56.11 | 54.89 |
| GSMUA_Achr8P27150_001 | Banana | plastid | 54.44 | 54.44 |
| Os08t0378900-02 | Rice | plastid | 55.0 | 52.38 |
| TraesCS4D01G073500.1 | Wheat | plastid | 53.33 | 51.89 |
| Zm00001d032337_P001 | Maize | plastid | 53.89 | 50.79 |
| EES14934 | Sorghum | plastid | 53.89 | 50.0 |
| TraesCS4A01G240000.1 | Wheat | plastid | 53.89 | 48.99 |
| HORVU4Hr1G012560.15 | Barley | cytosol, plastid | 48.89 | 39.29 |
Protein Annotations
| MapMan:10.5.9 | MapMan:15.6.1.2.2.10 | Gene3D:3.40.30.10 | EnsemblPlantsGene:Bra040287 | EnsemblPlants:Bra040287.1 | EnsemblPlants:Bra040287.1-P |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0006662 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0015035 | GO:GO:0019725 | GO:GO:0045454 | GO:GO:0055114 |
| InterPro:IPR013766 | UniProt:M4FGQ9 | PFAM:PF00085 | PRINTS:PR00421 | PFscan:PS51352 | PANTHER:PTHR10438 |
| PANTHER:PTHR10438:SF276 | SUPFAM:SSF52833 | InterPro:Thioredoxin | InterPro:Thioredoxin-like_sf | InterPro:Thioredoxin_domain | UniParc:UPI0002544B02 |
Description
AT3G06730 (E=3e-087) | thioredoxin family protein
Coordinates
chrA01:-:28082325..28083820
Molecular Weight (calculated)
20295.7 Da
IEP (calculated)
5.051
GRAVY (calculated)
-0.122
Length
180 amino acids
Sequence
(BLAST)
(BLAST)
001: MALVQSTTLA RLNVPLSPIL STLHAPSSLF LRRETRPPFS SSPAGNLSFS PSTHQRKLLC PPPRGKFVRE DYLVKKLSAE ELQELVKGER KVPVIVDFYA
101: TWCGPCILMA QELEMLAVEY ESNAMIVKVD TDDEYEFARD MQVRGLPTLL FISPDPSKDA IRTEGLIPIQ MMRDIIDNDM
101: TWCGPCILMA QELEMLAVEY ESNAMIVKVD TDDEYEFARD MQVRGLPTLL FISPDPSKDA IRTEGLIPIQ MMRDIIDNDM
001: MALVQSRTFP HLNTPLSPIL SSLHAPSSLF IRREIRPVAA PFSSSTAGNL PFSPLTRPRK LLCPPPRGKF VREDYLVKKL SAQELQELVK GDRKVPLIVD
101: FYATWCGPCI LMAQELEMLA VEYESNAIIV KVDTDDEYEF ARDMQVRGLP TLFFISPDPS KDAIRTEGLI PLQMMHDIID NEM
101: FYATWCGPCI LMAQELEMLA VEYESNAIIV KVDTDDEYEF ARDMQVRGLP TLFFISPDPS KDAIRTEGLI PLQMMHDIID NEM
Arabidopsis Description
CITRXThioredoxin-like protein CITRX, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M7X9]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.