Factsheet for Zm00001d032337_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d033181_P001
Zm00001d042847_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06730.1	Zm00001d033181_P001	AT1G69200.1	20511297
AT3G06730.1	Zm00001d042847_P001	AT3G54090.1	20511297

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES14934	Sorghum	plastid	89.01	87.63
TraesCS4B01G074900.1	Wheat	plastid	63.87	66.3
Os08t0378900-02	Rice	plastid	64.92	65.61
TraesCS4D01G073500.1	Wheat	plastid	62.83	64.86
TraesCS4A01G240000.1	Wheat	plastid	62.3	60.1
CDY24669	Canola	mitochondrion, plastid	48.69	55.69
GSMUA_Achr8P27150_001	Banana	plastid	52.36	55.56
CDY34934	Canola	plastid	50.79	55.43
Solyc01g096480.2.1	Tomato	plastid	50.26	54.86
PGSC0003DMT400013827	Potato	plastid	50.26	54.86
Bra040287.1-P	Field mustard	plastid	50.79	53.89
AT3G06730.1	Thale cress	plastid	50.79	53.01
HORVU4Hr1G012560.15	Barley	cytosol, plastid	61.26	52.23
VIT_13s0084g00790.t01	Wine grape	plastid	50.26	52.17
CDY05289	Canola	mitochondrion, plastid	49.74	51.91
KRH62827	Soybean	nucleus	48.69	48.44
KRH30074	Soybean	nucleus	47.64	46.91
Bra029601.1-P	Field mustard	plastid	33.51	45.07

Protein Annotations

MapMan:10.5.9	EntrezGene:100282002	MapMan:15.6.1.2.2.10	Gene3D:3.40.30.10	UniProt:B6T2E4	EMBL:BT084971
EMBL:EU959159	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006662	GO:GO:0008150	GO:GO:0008152	GO:GO:0009295	GO:GO:0009507
GO:GO:0009536	GO:GO:0009579	GO:GO:0009657	GO:GO:0009987	GO:GO:0015035	GO:GO:0016043
GO:GO:0019725	GO:GO:0045454	GO:GO:0047134	GO:GO:0055114	InterPro:IPR013766	ProteinID:ONM04896.1
PFAM:PF00085	PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF276
SUPFAM:SSF52833	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI000182C464
EnsemblPlantsGene:Zm00001d032337	EnsemblPlants:Zm00001d032337_P001	EnsemblPlants:Zm00001d032337_T001	SEG:seg	:	:

Description

Thioredoxin-like protein CITRX chloroplastic

Coordinates

chr1:+:223035489..223037623

Molecular Weight (calculated)

21285.7 Da

IEP (calculated)

4.854

GRAVY (calculated)

-0.077

Length

191 amino acids

Sequence
(BLAST)

001: MAPAAAFLSA CAAGSIPRAP FLIPRPLLLP IPLSPARWDR SRSCSLFGVG ANTRRAPTLR RNASTETVVP YVPGSGKYIA PDYLVKKVSA EEVQELVRGQ
101: RKVPLIVDFY ATWCGPCVQM AQDIEMLAVE YEDNALFVKV DTDDEYEFAK DMQVRGLPTL YFFSPDQNKD AIRTEGLIPM DMIRNIIDNE L

Best Arabidopsis Sequence Match ( AT3G06730.1 )
(BLAST)

001: MALVQSRTFP HLNTPLSPIL SSLHAPSSLF IRREIRPVAA PFSSSTAGNL PFSPLTRPRK LLCPPPRGKF VREDYLVKKL SAQELQELVK GDRKVPLIVD
101: FYATWCGPCI LMAQELEMLA VEYESNAIIV KVDTDDEYEF ARDMQVRGLP TLFFISPDPS KDAIRTEGLI PLQMMHDIID NEM

Arabidopsis Description

CITRXThioredoxin-like protein CITRX, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M7X9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.