Factsheet for TraesCS4A01G240000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G111500.1
TraesCS2B01G004000.1
TraesCS2D01G014800.1
TraesCS3A01G365700.1
TraesCS3B01G397500.1
TraesCS3D01G358800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06730.1	TraesCS2A01G111500.1	AT1G69200.1	20511297
AT3G06730.1	TraesCS2B01G004000.1	AT1G69200.1	20511297
AT3G06730.1	TraesCS2D01G014800.1	AT1G69200.1	20511297
AT3G06730.1	TraesCS3A01G365700.1	AT3G54090.1	20511297
AT3G06730.1	TraesCS3B01G397500.1	AT3G54090.1	20511297
AT3G06730.1	TraesCS3D01G358800.1	AT3G54090.1	20511297

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G073500.1	Wheat	plastid	91.41	97.84
TraesCS4B01G074900.1	Wheat	plastid	85.86	92.39
Os08t0378900-02	Rice	plastid	62.12	65.08
Zm00001d032337_P001	Maize	plastid	60.1	62.3
EES14934	Sorghum	plastid	60.61	61.86
HORVU4Hr1G012560.15	Barley	cytosol, plastid	66.16	58.48
CDY24669	Canola	mitochondrion, plastid	47.98	56.89
GSMUA_Achr8P27150_001	Banana	plastid	50.51	55.56
CDY34934	Canola	plastid	48.48	54.86
Bra040287.1-P	Field mustard	plastid	48.99	53.89
PGSC0003DMT400013827	Potato	plastid	47.47	53.71
Solyc01g096480.2.1	Tomato	plastid	47.47	53.71
CDY05289	Canola	mitochondrion, plastid	48.99	53.01
AT3G06730.1	Thale cress	plastid	48.48	52.46
VIT_13s0084g00790.t01	Wine grape	plastid	47.98	51.63
KRH62827	Soybean	nucleus	46.97	48.44
KRH30074	Soybean	nucleus	46.46	47.42
Bra029601.1-P	Field mustard	plastid	33.33	46.48

Protein Annotations

MapMan:10.5.9	MapMan:15.6.1.2.2.10	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006662	GO:GO:0008150	GO:GO:0008152
GO:GO:0009295	GO:GO:0009507	GO:GO:0009536	GO:GO:0009579	GO:GO:0009657	GO:GO:0009987
GO:GO:0015035	GO:GO:0016043	GO:GO:0019725	GO:GO:0045454	GO:GO:0047134	InterPro:IPR013766
PFAM:PF00085	PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF276
SUPFAM:SSF52833	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	EnsemblPlantsGene:TraesCS4A01G240000
EnsemblPlants:TraesCS4A01G240000.1	TIGR:cd02947	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4A:-:549799338..549800138

Molecular Weight (calculated)

21831.3 Da

IEP (calculated)

7.053

GRAVY (calculated)

-0.038

Length

198 amino acids

Sequence
(BLAST)

001: MASFPLASAA RSLPTIASHL PAAATTRSVS IPASPVPAAK NAASCSLSTR SRRRPAVRRN AAETYVPGSG KYIAPDYLVK KVSARELEEL VRGERKVPLI
101: VDFYATWCGP CVLMAQDVET LAVEYEDSAL FVKVDTDEEY EFARDMQVRG LPTLYFFSPD QGKDAVRTEG LIPIEMVRNI IENELCSLRW LIRALCCS

Best Arabidopsis Sequence Match ( AT3G06730.1 )
(BLAST)

001: MALVQSRTFP HLNTPLSPIL SSLHAPSSLF IRREIRPVAA PFSSSTAGNL PFSPLTRPRK LLCPPPRGKF VREDYLVKKL SAQELQELVK GDRKVPLIVD
101: FYATWCGPCI LMAQELEMLA VEYESNAIIV KVDTDDEYEF ARDMQVRGLP TLFFISPDPS KDAIRTEGLI PLQMMHDIID NEM

Arabidopsis Description

CITRXThioredoxin-like protein CITRX, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M7X9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.