Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 10
- cytosol 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400052461 | |
| PGSC0003DMT400072750 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G06730.1 | PGSC0003DMT400072750 | AT1G69200.1 | 20511297 |
| AT3G06730.1 | PGSC0003DMT400052461 | AT3G54090.1 | 20511297 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g096480.2.1 | Tomato | plastid | 93.71 | 93.71 |
| CDY24669 | Canola | mitochondrion, plastid | 64.0 | 67.07 |
| CDY34934 | Canola | plastid | 64.0 | 64.0 |
| Bra040287.1-P | Field mustard | plastid | 64.57 | 62.78 |
| VIT_13s0084g00790.t01 | Wine grape | plastid | 65.14 | 61.96 |
| CDY05289 | Canola | mitochondrion, plastid | 64.0 | 61.2 |
| AT3G06730.1 | Thale cress | plastid | 62.29 | 59.56 |
| GSMUA_Achr8P27150_001 | Banana | plastid | 59.43 | 57.78 |
| KRH62827 | Soybean | nucleus | 62.86 | 57.29 |
| Bra029601.1-P | Field mustard | plastid | 45.71 | 56.34 |
| KRH30074 | Soybean | nucleus | 61.14 | 55.15 |
| Os08t0378900-02 | Rice | plastid | 56.0 | 51.85 |
| TraesCS4B01G074900.1 | Wheat | plastid | 53.71 | 51.09 |
| TraesCS4D01G073500.1 | Wheat | plastid | 53.71 | 50.81 |
| Zm00001d032337_P001 | Maize | plastid | 54.86 | 50.26 |
| EES14934 | Sorghum | plastid | 53.14 | 47.94 |
| TraesCS4A01G240000.1 | Wheat | plastid | 53.71 | 47.47 |
| HORVU4Hr1G012560.15 | Barley | cytosol, plastid | 52.0 | 40.62 |
Protein Annotations
| MapMan:10.5.9 | EntrezGene:102585257 | MapMan:15.6.1.2.2.10 | Gene3D:3.40.30.10 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006662 | GO:GO:0006950 |
| GO:GO:0006952 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008219 | GO:GO:0009295 | GO:GO:0009507 |
| GO:GO:0009536 | GO:GO:0009579 | GO:GO:0009657 | GO:GO:0009987 | GO:GO:0015035 | GO:GO:0016043 |
| GO:GO:0016491 | GO:GO:0019725 | GO:GO:0031347 | GO:GO:0034051 | GO:GO:0045454 | GO:GO:0047134 |
| GO:GO:0055114 | InterPro:IPR013766 | UniProt:M1A3D5 | PFAM:PF00085 | EnsemblPlantsGene:PGSC0003DMG400005407 | PGSC:PGSC0003DMG400005407 |
| EnsemblPlants:PGSC0003DMT400013827 | PRINTS:PR00421 | PFscan:PS51352 | PANTHER:PTHR10438 | PANTHER:PTHR10438:SF276 | SUPFAM:SSF52833 |
| InterPro:Thioredoxin | InterPro:Thioredoxin-like_sf | InterPro:Thioredoxin_domain | UniParc:UPI0002952E6E | RefSeq:XP_006347665.1 | SEG:seg |
Description
CITRXThioredoxin-like protein CITRX, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:M1A3D5]
Coordinates
chr1:+:74194742..74198124
Molecular Weight (calculated)
19880.0 Da
IEP (calculated)
6.002
GRAVY (calculated)
-0.184
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MQAASLAFHP PALHTSPSYF SSKLPHHLNY SLFSHTPPTS TLSLTQTLSR KSICQPRAVG KYVREDYLVK KLSAKEIQEL IKGERNVPLI IDFYATWCGP
101: CILMAQELEM LAVEYENNAL IVKVDTDDEY EFARDMQVRG LPTLYFISPD SSKDAIRTEG LIPIQMMRDI INNDL
101: CILMAQELEM LAVEYENNAL IVKVDTDDEY EFARDMQVRG LPTLYFISPD SSKDAIRTEG LIPIQMMRDI INNDL
001: MALVQSRTFP HLNTPLSPIL SSLHAPSSLF IRREIRPVAA PFSSSTAGNL PFSPLTRPRK LLCPPPRGKF VREDYLVKKL SAQELQELVK GDRKVPLIVD
101: FYATWCGPCI LMAQELEMLA VEYESNAIIV KVDTDDEYEF ARDMQVRGLP TLFFISPDPS KDAIRTEGLI PLQMMHDIID NEM
101: FYATWCGPCI LMAQELEMLA VEYESNAIIV KVDTDDEYEF ARDMQVRGLP TLFFISPDPS KDAIRTEGLI PLQMMHDIID NEM
Arabidopsis Description
CITRXThioredoxin-like protein CITRX, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M7X9]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.