CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73510
CDX78206
CDX95956
CDY40900
CDY54150

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06730.1	CDX95956	AT1G69200.1	20511297
AT3G06730.1	CDY40900	AT1G69200.1	20511297
AT3G06730.1	CDY54150	AT1G69200.1	20511297
AT3G06730.1	CDX73510	AT3G54090.1	20511297
AT3G06730.1	CDX78206	AT3G54090.1	20511297

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05289	Canola	mitochondrion, plastid	97.01	88.52
Bra029601.1-P	Field mustard	plastid	74.85	88.03
CDY34934	Canola	plastid	88.02	84.0
AT3G06730.1	Thale cress	plastid	90.42	82.51
Solyc01g096480.2.1	Tomato	plastid	67.66	64.57
PGSC0003DMT400013827	Potato	plastid	67.07	64.0
VIT_13s0084g00790.t01	Wine grape	plastid	70.06	63.59
KRH62827	Soybean	nucleus	66.47	57.81
KRH30074	Soybean	nucleus	66.47	57.22
GSMUA_Achr8P27150_001	Banana	plastid	58.68	54.44
TraesCS4B01G074900.1	Wheat	plastid	58.08	52.72
Os08t0378900-02	Rice	plastid	58.68	51.85
TraesCS4D01G073500.1	Wheat	plastid	56.29	50.81
Zm00001d032337_P001	Maize	plastid	55.69	48.69
TraesCS4A01G240000.1	Wheat	plastid	56.89	47.98
EES14934	Sorghum	plastid	55.69	47.94
HORVU4Hr1G012560.15	Barley	cytosol, plastid	55.09	41.07

Protein Annotations

MapMan:10.5.9	MapMan:15.6.1.2.2.10	Gene3D:3.40.30.10	GO:A0A078GH96	UniProt:A0A078GH96	EnsemblPlants:CDY24669
ProteinID:CDY24669	ProteinID:CDY24669.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623
GO:GO:0006662	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725
GO:GO:0045454	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00027046001	InterPro:IPR013766	PFAM:PF00085	PRINTS:PR00421
PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF276	SUPFAM:SSF52833	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf
InterPro:Thioredoxin_domain	UniParc:UPI0004EE5318	:	:	:	:

Description

BnaA05g30680DBnaA05g30680D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GH96]

Coordinates

chrLK032162:-:269386..270887

Molecular Weight (calculated)

19087.5 Da

IEP (calculated)

5.035

GRAVY (calculated)

-0.017

Length

167 amino acids

Sequence
(BLAST)

001: MALVQSRTLP RLTVPFSPIL STLHAPSSLF LRREIRPVAS PFSKIICPPP RGKFVREDYL VRKLSAQELQ ELVKGERKVP LIVDFYATWC GPCILMAQEL
101: EMLAVEYESN AMIVKVDTDD EYEFARDMQV RGLPTLFFIS PDPSKDAIRT EGLIPIQMMR DIIDNDM

Best Arabidopsis Sequence Match ( AT3G06730.1 )
(BLAST)

001: MALVQSRTFP HLNTPLSPIL SSLHAPSSLF IRREIRPVAA PFSSSTAGNL PFSPLTRPRK LLCPPPRGKF VREDYLVKKL SAQELQELVK GDRKVPLIVD
101: FYATWCGPCI LMAQELEMLA VEYESNAIIV KVDTDDEYEF ARDMQVRGLP TLFFISPDPS KDAIRTEGLI PLQMMHDIID NEM

Arabidopsis Description

CITRXThioredoxin-like protein CITRX, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M7X9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.