CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY05289
CDY24669
CDY34934

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G69200.1	CDY05289	AT3G06730.1	20511297
AT1G69200.1	CDY24669	AT3G06730.1	20511297
AT1G69200.1	CDY34934	AT3G06730.1	20511297

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX95956	Canola	plastid	95.13	96.38
CDY54150	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	65.91	86.02
AT1G69200.1	Thale cress	plastid	84.09	84.36
VIT_01s0011g00240.t01	Wine grape	mitochondrion, plastid	57.47	62.65
KRH75089	Soybean	nucleus	57.14	61.43
KRH70953	Soybean	nucleus	56.98	61.26
Solyc05g012100.2.1	Tomato	nucleus	53.08	50.7
PGSC0003DMT400072750	Potato	mitochondrion	53.41	50.62
EER93838	Sorghum	mitochondrion	43.18	45.63
TraesCS2D01G014800.1	Wheat	plastid	42.69	45.5
Os03t0602600-01	Rice	nucleus	43.51	45.5
TraesCS2A01G111500.1	Wheat	plastid	42.53	45.33
TraesCS2B01G004000.1	Wheat	plastid	42.53	45.33
HORVU2Hr1G002260.1	Barley	plastid	42.21	44.98
HORVU2Hr1G002180.1	Barley	plastid	42.21	44.98
HORVU4Hr1G032860.1	Barley	cytosol	23.7	44.38
CDX78206	Canola	cytosol	27.11	44.18
HORVU7Hr1G106650.1	Barley	cytosol	14.77	42.92
Zm00001d033181_P001	Maize	plastid	42.21	39.33
CDX73510	Canola	plastid	29.22	38.88
CDY00619	Canola	cytosol	18.34	34.66
CDX67798	Canola	cytosol	18.18	34.36
CDX98377	Canola	cytosol	18.18	34.36
CDY06000	Canola	cytosol	18.18	34.36
CDX89022	Canola	cytosol	18.18	34.36
CDX71907	Canola	cytosol	18.02	34.05
CDY15383	Canola	cytosol	17.53	33.13
CDY00501	Canola	cytosol	18.34	32.94
CDY56614	Canola	cytosol	17.37	32.92
CDY10801	Canola	cytosol	17.37	32.92
CDY51025	Canola	cytosol	18.18	32.65
CDY23944	Canola	cytosol	17.21	32.62
CDX84788	Canola	cytosol	17.21	32.62
CDY38879	Canola	cytosol	17.86	32.07
CDY19092	Canola	plastid, vacuole	17.53	31.95
CDX90749	Canola	cytosol	16.56	31.58
CDY05089	Canola	cytosol	16.56	31.58
CDY32617	Canola	cytosol	17.69	30.62
CDX86540	Canola	cytosol	17.05	30.43
CDX96146	Canola	plastid	18.18	28.79
CDY55675	Canola	plastid	18.02	28.61
CDY10167	Canola	endoplasmic reticulum, golgi	16.4	27.52
CDY47709	Canola	endoplasmic reticulum, golgi	14.29	26.04
CDY15557	Canola	cytosol	6.49	24.39
CDY05997	Canola	cytosol, mitochondrion	4.55	20.9
CDY09993	Canola	cytosol	3.41	20.19
CDY65484	Canola	cytosol	7.63	19.26
CDY00632	Canola	cytosol	7.63	19.11
CDX71905	Canola	mitochondrion	2.76	18.48

Protein Annotations

EnsemblPlants:CDY40900	EnsemblPlantsGene:GSBRNA2T00071941001	Gene3D:3.40.1190.20	InterPro:IPR029056	InterPro:PfkB_dom	InterPro:Ribokinase-like
PANTHER:PTHR43085	PANTHER:PTHR43085:SF2	PFAM:PF00294	ProteinID:CDY40900	ProteinID:CDY40900.1	SEG:seg
SUPFAM:SSF53613	UniParc:UPI0004EE6B99	UniProt:A0A078HQK9	MapMan:15.6.1.2.2.12	:	:

Description

BnaC06g30380DBnaC06g30380D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HQK9]

Coordinates

chrLK032484:+:6926..9427

Molecular Weight (calculated)

68818.9 Da

IEP (calculated)

4.699

GRAVY (calculated)

-0.651

Length

616 amino acids

Sequence
(BLAST)

001: MASLSFTQFL PFPRYNADVV PCLQSLGFVK FRGERLNGKQ GFLVVAGRRK LSESAPLDED DGGNGAVGGK KPTKAPKRSG ARTTKKKVVA KKDEPLEESS
101: QLLVASDDVS DNESDTKTEP RRARKKASPA AASSDVEEAK TEKKVRRKRT TKKDKQVEEG LVTYDEASDV DEPLTVEATD ADSEGEEIDL SKHESEDISH
201: TYGWPPLVCC FGSAQHAFVP SGRPANRLLD YEQQERIKDA VWAPEKYIRA PGGCAGGVAI ALASLGGKVA FMGKLGDDDF GQAMLYYLNV CQVQTRSVKI
301: DSKRVTACST MKISKRGRLK STCVKPCAED SLSKSEINVD VLKEAKMFYF TTHSLQDKKM MSTTLQAIKI SKQLGNVIFY DLNLPLPLWQ SREETKSLIQ
401: EVWDLADVIE VTKQELEFLC GIEPPEEFDT KNNDSSKFVH YEPETVEPLW HENLKVLFVT NGTSKIHYYT KEHNGAVLGM EDVPITPFTR DMSASGDGIV
501: AGLIRMLTVQ PDLMNDKGYL ERTARYAIEC GVVDQWLLAQ TRGYPPKDDM EEEDEDDEDD EMELDPNGIR SITEREYRTS KPYDEPDGPY VMKPEEEREY
601: RKLELVGSVG EDDDSS

Best Arabidopsis Sequence Match ( AT1G69200.1 )
(BLAST)

001: MASLSFTQFL SFPRCNADVP CLLQSHGFVK FRGERWNGKQ SFSMAAGRRK LSESAPLEEE GNDGNGAVVG KKPSKSVKRT TKKKVVVKDE PLEEISEFLV
101: DNDDVLDKES IVSALKPKKT RTRKKAAAAS SDVEEVKTEK KVRRKRTVKK DKDVEDDLAT IMDAEVSDVE EALAVESTDT ESEEEEIDLS KHEGEDISHT
201: YGWPPLVCCF GSAQHAFVPS GRPANRLLDY ELHERMRDAK WAPEKYIRAP GGCAGGVAIA LASLGGKVAF MGKLGADDYG QAMLYYLNVC KVQTRSVKID
301: GKRVTACSTM KISKRGRLKS TCIKPCAEDS LSKSEINVDV LKEAKMFYFS THSLLDKKMM STTIQAIKIS KQLGNVIFYD LNLPLPLWHS SEETKSFIQE
401: VWNLADVIEI TKQELEFLCG IEPTEEFDTE NNDISKFVHY PPETVEQLWH ENLKVLFVTN GTSKIHYYTK EHNGAVSGME DVPITPFTRD MSASGDGIVA
501: GLIRMLTVQP DLMNNKGYLE RTARYAIECG IIDQWLLAQT RGYPPKDDME EEEDDEEEDE VESDPNGIRS ITEKEYRTSK PYDEPDGPYV MKPVEEREYK
601: KLELVGSMFE DGSL

Arabidopsis Description

FLN2Fructokinase-like 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4I0K2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.