Factsheet for TraesCS4B01G074900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G111500.1
TraesCS2B01G004000.1
TraesCS2D01G014800.1
TraesCS3A01G365700.1
TraesCS3B01G397500.1
TraesCS3D01G358800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06730.1	TraesCS2A01G111500.1	AT1G69200.1	20511297
AT3G06730.1	TraesCS2B01G004000.1	AT1G69200.1	20511297
AT3G06730.1	TraesCS2D01G014800.1	AT1G69200.1	20511297
AT3G06730.1	TraesCS3A01G365700.1	AT3G54090.1	20511297
AT3G06730.1	TraesCS3B01G397500.1	AT3G54090.1	20511297
AT3G06730.1	TraesCS3D01G358800.1	AT3G54090.1	20511297

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G073500.1	Wheat	plastid	93.48	92.97
TraesCS4A01G240000.1	Wheat	plastid	92.39	85.86
Os08t0378900-02	Rice	plastid	67.93	66.14
EES14934	Sorghum	plastid	67.39	63.92
Zm00001d032337_P001	Maize	plastid	66.3	63.87
CDY24669	Canola	mitochondrion, plastid	52.72	58.08
HORVU4Hr1G012560.15	Barley	cytosol, plastid	69.57	57.14
CDY34934	Canola	plastid	54.35	57.14
GSMUA_Achr8P27150_001	Banana	plastid	54.89	56.11
Bra040287.1-P	Field mustard	plastid	54.89	56.11
AT3G06730.1	Thale cress	plastid	54.35	54.64
CDY05289	Canola	mitochondrion, plastid	54.35	54.64
VIT_13s0084g00790.t01	Wine grape	plastid	53.8	53.8
PGSC0003DMT400013827	Potato	plastid	51.09	53.71
Solyc01g096480.2.1	Tomato	plastid	51.09	53.71
KRH62827	Soybean	nucleus	52.17	50.0
KRH30074	Soybean	nucleus	51.63	48.97
Bra029601.1-P	Field mustard	plastid	36.41	47.18

Protein Annotations

MapMan:10.5.9	MapMan:15.6.1.2.2.10	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006662	GO:GO:0008150	GO:GO:0008152
GO:GO:0009295	GO:GO:0009507	GO:GO:0009536	GO:GO:0009579	GO:GO:0009657	GO:GO:0009987
GO:GO:0015035	GO:GO:0016043	GO:GO:0019725	GO:GO:0045454	GO:GO:0047134	InterPro:IPR013766
PFAM:PF00085	PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF276
SUPFAM:SSF52833	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	EnsemblPlantsGene:TraesCS4B01G074900
EnsemblPlants:TraesCS4B01G074900.1	TIGR:cd02947	:	:	:	:

Description

No Description!

Coordinates

chr4B:+:70575831..70576385

Molecular Weight (calculated)

20226.2 Da

IEP (calculated)

4.882

GRAVY (calculated)

-0.080

Length

184 amino acids

Sequence
(BLAST)

001: MASFPLASAA RSLPTLGSHL PAAATTRSVS IPASPVPAAK NATSCSFSTR SCRPTVRRNA AETYVPGSGK YIAPDYLVKK VSAKELEELV RGERKVPLIV
101: DFYATWCGPC VLMAQDIEML AVEYEDSALF VKVDTDEEYE FARDMQVRGL PTLYFFSPDQ GKDAIRTEGL IPIEMVRNII ENEL

Best Arabidopsis Sequence Match ( AT3G06730.1 )
(BLAST)

001: MALVQSRTFP HLNTPLSPIL SSLHAPSSLF IRREIRPVAA PFSSSTAGNL PFSPLTRPRK LLCPPPRGKF VREDYLVKKL SAQELQELVK GDRKVPLIVD
101: FYATWCGPCI LMAQELEMLA VEYESNAIIV KVDTDDEYEF ARDMQVRGLP TLFFISPDPS KDAIRTEGLI PLQMMHDIID NEM

Arabidopsis Description

CITRXThioredoxin-like protein CITRX, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M7X9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.