Factsheet for Solyc01g096480.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc05g012100.2.1
Solyc09g011850.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06730.1	Solyc05g012100.2.1	AT1G69200.1	20511297
AT3G06730.1	Solyc09g011850.2.1	AT3G54090.1	20511297

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400013827	Potato	plastid	93.71	93.71
CDY24669	Canola	mitochondrion, plastid	64.57	67.66
CDY34934	Canola	plastid	63.43	63.43
Bra040287.1-P	Field mustard	plastid	64.57	62.78
VIT_13s0084g00790.t01	Wine grape	plastid	65.71	62.5
CDY05289	Canola	mitochondrion, plastid	64.0	61.2
AT3G06730.1	Thale cress	plastid	62.29	59.56
GSMUA_Achr8P27150_001	Banana	plastid	60.57	58.89
KRH62827	Soybean	nucleus	63.43	57.81
Bra029601.1-P	Field mustard	plastid	45.71	56.34
KRH30074	Soybean	nucleus	61.14	55.15
Os08t0378900-02	Rice	plastid	56.57	52.38
TraesCS4B01G074900.1	Wheat	plastid	53.71	51.09
TraesCS4D01G073500.1	Wheat	plastid	53.71	50.81
Zm00001d032337_P001	Maize	plastid	54.86	50.26
EES14934	Sorghum	plastid	53.71	48.45
TraesCS4A01G240000.1	Wheat	plastid	53.71	47.47
HORVU4Hr1G012560.15	Barley	cytosol, plastid	53.71	41.96

Protein Annotations

MapMan:10.5.9	MapMan:15.6.1.2.2.10	Gene3D:3.40.30.10	EMBL:AF261142	GO:GO:0003674	GO:GO:0003824
GO:GO:0004791	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006662	GO:GO:0006950	GO:GO:0006952	GO:GO:0008150	GO:GO:0008152
GO:GO:0008219	GO:GO:0009295	GO:GO:0009507	GO:GO:0009536	GO:GO:0009579	GO:GO:0009657
GO:GO:0009987	GO:GO:0015035	GO:GO:0016043	GO:GO:0016491	GO:GO:0016671	GO:GO:0019725
GO:GO:0031347	GO:GO:0034051	GO:GO:0034599	GO:GO:0045454	GO:GO:0047134	GO:GO:0055114
GO:GO:0098869	InterPro:IPR013766	PFAM:PF00085	PRINTS:PR00421	PFscan:PS51352	PANTHER:PTHR10438
PANTHER:PTHR10438:SF276	UniProt:Q9LKW0	SUPFAM:SSF52833	EnsemblPlantsGene:Solyc01g096480.2	EnsemblPlants:Solyc01g096480.2.1	InterPro:Thioredoxin
InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI00000A1AB6	SEG:seg	:	:

Description

CITRXThioredoxin-like protein CITRX, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LKW0]

Coordinates

chr1:+:87560207..87563634

Molecular Weight (calculated)

19806.0 Da

IEP (calculated)

5.651

GRAVY (calculated)

-0.139

Length

175 amino acids

Sequence
(BLAST)

001: MQAASLAFHP PALRTSPSYL SSKLPHHLNY SLFKHAPSTS TLSLTQVLSR NTICKPPAVG KYVREDYLVK KLSAKEIQEL IKGERNVPLI IDFYATWCGP
101: CILMAQELEM LAVEYENNAL IVKVDTDDEY EFARDMQVRG LPTLYFISPD SSKDAIRTEG LIPIQMMRDI IDNDL

Best Arabidopsis Sequence Match ( AT3G06730.1 )
(BLAST)

001: MALVQSRTFP HLNTPLSPIL SSLHAPSSLF IRREIRPVAA PFSSSTAGNL PFSPLTRPRK LLCPPPRGKF VREDYLVKKL SAQELQELVK GDRKVPLIVD
101: FYATWCGPCI LMAQELEMLA VEYESNAIIV KVDTDDEYEF ARDMQVRGLP TLFFISPDPS KDAIRTEGLI PLQMMHDIID NEM

Arabidopsis Description

CITRXThioredoxin-like protein CITRX, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M7X9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.