Factsheet for HORVU4Hr1G012560.15

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G002180.1
HORVU2Hr1G002260.1
HORVU4Hr1G032860.1
HORVU7Hr1G106650.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06730.1	HORVU2Hr1G002180.1	AT1G69200.1	20511297
AT3G06730.1	HORVU2Hr1G002260.1	AT1G69200.1	20511297
AT3G06730.1	HORVU4Hr1G032860.1	AT1G69200.1	20511297
AT3G06730.1	HORVU7Hr1G106650.1	AT1G69200.1	20511297

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G074900.1	Wheat	plastid	57.14	69.57
TraesCS4D01G073500.1	Wheat	plastid	56.7	68.65
TraesCS4A01G240000.1	Wheat	plastid	58.48	66.16
Zm00001d032337_P001	Maize	plastid	52.23	61.26
Os08t0378900-02	Rice	plastid	51.34	60.85
EES14934	Sorghum	plastid	52.23	60.31
CDY24669	Canola	mitochondrion, plastid	41.07	55.09
GSMUA_Achr8P27150_001	Banana	plastid	43.3	53.89
Solyc01g096480.2.1	Tomato	plastid	41.96	53.71
PGSC0003DMT400013827	Potato	plastid	40.62	52.0
VIT_13s0084g00790.t01	Wine grape	plastid	42.41	51.63
CDY34934	Canola	plastid	39.29	50.29
CDY05289	Canola	mitochondrion, plastid	41.07	50.27
AT3G06730.1	Thale cress	plastid	41.07	50.27
Bra040287.1-P	Field mustard	plastid	39.29	48.89
KRH62827	Soybean	nucleus	39.73	46.35
KRH30074	Soybean	nucleus	39.29	45.36
Bra029601.1-P	Field mustard	plastid	28.12	44.37

Protein Annotations

MapMan:10.5.9	MapMan:15.6.1.2.2.10	Gene3D:3.40.30.10	UniProt:A0A287N905	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006662	GO:GO:0008150
GO:GO:0008152	GO:GO:0009295	GO:GO:0009507	GO:GO:0009536	GO:GO:0009579	GO:GO:0009657
GO:GO:0009987	GO:GO:0015035	GO:GO:0016043	GO:GO:0019725	GO:GO:0045454	GO:GO:0047134
GO:GO:0055114	EnsemblPlantsGene:HORVU4Hr1G012560	EnsemblPlants:HORVU4Hr1G012560.15	InterPro:IPR013766	PFAM:PF00085	PRINTS:PR00421
ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF276	SUPFAM:SSF52833	InterPro:Thioredoxin
InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI000B47D74F	SEG:seg	:

Description

No Description!

Coordinates

chrchr4H:-:41697254..41698533

Molecular Weight (calculated)

24834.6 Da

IEP (calculated)

7.997

GRAVY (calculated)

-0.336

Length

224 amino acids

Sequence
(BLAST)

001: SAHATQTPSV HLEDRILLVP QTSPAMASFP LASAGRSLPP QGFHHPAAAT TRTVSIPSPP ASSKGAAPRS LSARSHRDRR PTVRRNAAEA YVPGSGKYIA
101: PDYLVRKVSA RELEELVRGQ RRVPLVVDFY ATWCGPCVLM AQDVETLAVE YEDTALFVKV DTDEEYEFAR DMQVRGLPTL YFFSPDQGKD AIRTEGLIPI
201: EMVRNIIDNE LCCNRRTVSH RLPH

Best Arabidopsis Sequence Match ( AT3G06730.1 )
(BLAST)

001: MALVQSRTFP HLNTPLSPIL SSLHAPSSLF IRREIRPVAA PFSSSTAGNL PFSPLTRPRK LLCPPPRGKF VREDYLVKKL SAQELQELVK GDRKVPLIVD
101: FYATWCGPCI LMAQELEMLA VEYESNAIIV KVDTDDEYEF ARDMQVRGLP TLFFISPDPS KDAIRTEGLI PLQMMHDIID NEM

Arabidopsis Description

CITRXThioredoxin-like protein CITRX, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M7X9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.